Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0230
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068...    31   0.64 
07_03_1631 - 28258897-28259984,28260518-28260772,28260861-282609...    29   3.4  

>11_04_0165 +
           14305885-14306007,14306538-14306642,14306792-14306869,
           14307710-14307757,14308173-14308314,14308394-14308464,
           14309210-14309306,14309517-14309728,14311995-14312267
          Length = 382

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 592 LNYTRKPVSNANFLFHWISAYTSCKMDAITDNCRGLSRI 476
           L   +K ++N N +  W+  + SCK D I+ N    S +
Sbjct: 62  LALNKKDLANPNIMNRWLHHFESCKQDCISINAHSTSSV 100


>07_03_1631 -
           28258897-28259984,28260518-28260772,28260861-28260975,
           28261097-28261149,28261238-28261498,28262122-28262175,
           28262294-28262536,28262830-28263073,28263877-28263909
          Length = 781

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = -2

Query: 629 IPSYK*HRIQQLPELHQETCFKCQFSIPLDFC---LHFL--QNGRHYGQLSRFI*DLLYK 465
           +PS   H +  LP  HQ   F C  S+P+ F      +L  + G    ++ R I    YK
Sbjct: 539 VPSIFSHFVTNLPAFHQVLVFVCVKSVPVPFVPEDERYLIGRIGPREYRMYRCIVRYGYK 598

Query: 464 TVVSGELNFQGLKTLSVA 411
            V   + NF+    +S+A
Sbjct: 599 DVQKDDENFENHLVMSIA 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,474
Number of Sequences: 37544
Number of extensions: 247594
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)