Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0230
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              28   8.0  

>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -3

Query: 613 NTEYNNCLNYTRKPVSN--ANFLFHWISAYTSCKMDAITDNCRGLSRI 476
           N EY NC   T+K ++       F +   Y  CK DA    C+ + +I
Sbjct: 496 NAEYQNCFQRTKKRIARDPGQKSFGFSEMYIFCKFDAF---CKRIEKI 540


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 146 TRGLSSPITFFPINSEYVRKVV 211
           T+GLS  + F PI ++YV +V+
Sbjct: 817 TKGLSDKVYFLPITADYVTQVI 838


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,392,574
Number of Sequences: 59808
Number of extensions: 318838
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)