Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0230
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    24   1.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    24   1.5  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   3.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   3.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   3.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   3.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.2  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 625 HLINNTEYNNCLNYTRKPVSNANFL 551
           ++ N + YNN  NY +K   N N++
Sbjct: 89  YISNISNYNNNNNYNKKLYYNINYI 113


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 625 HLINNTEYNNCLNYTRKPVSNANFL 551
           ++ N + YNN  NY +K   N N++
Sbjct: 89  YISNISNYNNDNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 625 HLINNTEYNNCLNYTRKPVSNANFL 551
           ++ N + YNN  NY +K   N N++
Sbjct: 327 YISNISNYNNNNNYNKKLYYNINYI 351


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 622 LINNTEYNNCLNYTRKPVSNANF 554
           L NN +Y+N  NY     +N N+
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 622 LINNTEYNNCLNYTRKPVSNANF 554
           L NN +Y+N  NY     +N N+
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 622 LINNTEYNNCLNYTRKPVSNANF 554
           L NN +Y+N  NY     +N N+
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 622 LINNTEYNNCLNYTRKPVSNANF 554
           L NN +Y+N  NY     +N N+
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNY 107


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 561 PIFYSIGFLPTLLAKWT 511
           PIF  IG+   +L+ WT
Sbjct: 95  PIFKGIGYATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 561 PIFYSIGFLPTLLAKWT 511
           PIF  IG+   +L+ WT
Sbjct: 148 PIFKGIGYATCVLSCWT 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,957
Number of Sequences: 438
Number of extensions: 3245
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)