Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0228
         (788 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    45   0.002
UniRef50_A0E464 Cluster: Chromosome undetermined scaffold_78, wh...    36   1.5  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   2.0  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 339 YLLP*WVDELTAHLVLSGYWSP 404
           +LL  WVDELTAHLVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A0E464 Cluster: Chromosome undetermined scaffold_78, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_78, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1129

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 690  LSVIRTLHITTVPTLQVERQNHIYKETEIKFWCLVF 583
            +S I  L ITTV    + R  H + ET+ +FW L F
Sbjct: 1093 ISTINLLSITTVQIKDIRRWKHFFTETKTQFWALQF 1128


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 538 WYLPVRTHKRSYHQ 579
           WYLP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,335,227
Number of Sequences: 1657284
Number of extensions: 15692429
Number of successful extensions: 29184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29181
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)