Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0228
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.69 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.1  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   8.5  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 445 QVLKISCIVTTAAPTFKPKRITASRQK*AGRWYLPV 552
           Q LKISC+ TT  P    +   AS  +  G +YLP+
Sbjct: 27  QPLKISCLKTTPPPEEDNRGCAASVGE--GSFYLPM 60


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 650 PYKWKGKITFIKKRK 606
           P +W G++T  KKRK
Sbjct: 234 PLEWTGQVTVRKKRK 248


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 389 WLLEPIDIHNVNAPPTLRYK 448
           WL  P  + N   P +LR+K
Sbjct: 7   WLTPPHSLGNTVTPVSLRFK 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,265
Number of Sequences: 336
Number of extensions: 4492
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)