Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0228
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   3.1  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   7.1  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    25   9.4  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 768 LLSLTD*SLNTGIKSSQPSVN-VYDQHLSVIRTLHITTVPTLQVERQ-NHIYK 616
           L  L D ++ T      PS++ V+D   +   TLH T +  L ++RQ  H YK
Sbjct: 421 LHKLIDSAMQTEKVKKDPSLSQVFDGISNSFNTLHKTVLEMLDLQRQAEHYYK 473


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -3

Query: 426 AFTLWMSMGSSNHLTPGGL*ARPPIKAINKKKSIGGSH*LILDRQ*ATHYKKPINKSSK 250
           A T++M +      T GGL A  P+  I +  SI G+  + L R    +YK  I  ++K
Sbjct: 138 AETIFMRLLRRKPGTWGGLCAMKPVSQIPESDSICGASNIELLRPLLPYYKNQILNTAK 196


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = -3

Query: 744 LNTGIKSSQPSVNVYDQHLSVIRTLHITTVPTLQVERQNHIYKETEIKFW 595
           L+  +K  Q      D + ++I +        ++ +R+   Y   E+KFW
Sbjct: 98  LDAMLKRKQKLSEELDHYRAIISSKRELRAQEMEAKRKQDSYNNPELKFW 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,850
Number of Sequences: 5004
Number of extensions: 67822
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)