Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0228
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_50821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4)                    29   5.7  
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 693 HLSVIRTLHITTVPTLQVERQNHIYKETEIKFWCLVFLLVV 571
           H SVI  LH  T+ TLQ  R   +   T I  +C V L ++
Sbjct: 27  HHSVIDVLHYETIFTLQERRHGAVIIHTFICLYCFVALAIL 67


>SB_50821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 411 SIT*MRHLL*DTSSKDLMYSYNGCPNLQTETHYCFTPEIGGAVVPTRADSQEVLPPVKTP 590
           +I  ++ LL D+ +     S+  C   +TE+  CFTP        T+ +SQ    P KT 
Sbjct: 13  NIVDLKALLGDSDAASGADSHRVCTPTKTESQSCFTP--------TKTESQSCFTPTKTE 64

Query: 591 DTRTLFP 611
               L P
Sbjct: 65  SPSCLHP 71


>SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4)
          Length = 1209

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 475  TAAPTFKPKRITASRQK*AGRWYLPVRTHKRSYHQ*KHQTPELYFRFFINVIL 633
            TA P +K KR  +  Q    R  LP+R  K++  + +  T  L F FF+  +L
Sbjct: 1111 TAEPQYKGKREESLMQ----RKQLPIREVKQTRFERQKDTGSLTFSFFVKFVL 1159


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 655 PHPTSGKAKSHL*RNGNKVLVSGVFTGGRTSCESARVGTTAPPISGVKQ 509
           PHP+ G  +         V VSG    G+   +S  +GT+  P+  ++Q
Sbjct: 475 PHPSQGSLQPQGTHYPQGVAVSGASASGQMMMQSPYMGTSPQPVYVMQQ 523


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,054,597
Number of Sequences: 59808
Number of extensions: 496711
Number of successful extensions: 1046
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)