Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0228
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ249344-1|CAB77052.1|  449|Caenorhabditis elegans putative inte...    29   5.0  
AF099913-1|AAC68756.1|  466|Caenorhabditis elegans Paralysed arr...    29   5.0  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AJ249344-1|CAB77052.1|  449|Caenorhabditis elegans putative
           integrin-linked kinase protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 317 LPPIDFFLFIALMGGRAHSPPGV 385
           LPP++  + IAL G R H PPG+
Sbjct: 393 LPPMECGMKIALEGLRVHIPPGI 415


>AF099913-1|AAC68756.1|  466|Caenorhabditis elegans Paralysed arrest
           at two-fold protein4 protein.
          Length = 466

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 317 LPPIDFFLFIALMGGRAHSPPGV 385
           LPP++  + IAL G R H PPG+
Sbjct: 410 LPPMECGMKIALEGLRVHIPPGI 432


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 463 MRSLELVSQSRWRIYVMDVYGLQ*PLNTRW 374
           M S++L+  S  RI+   VYG++ P+N  W
Sbjct: 216 MASVQLIISSVRRIHDAAVYGIKDPINVSW 245


>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical protein
            DH11.3 protein.
          Length = 1270

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 600  FWCLVFLLVVGPLVSPHG*VPPPRLFLA*SSNAFRFEGWG 481
            F C + L  VG L+  HG   P ++FLA   N  +   WG
Sbjct: 948  FACDMLLFFVGTLLIYHGRYSPDKVFLA--FNGAQMSAWG 985


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,143,051
Number of Sequences: 27780
Number of extensions: 379050
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)