Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0222
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    32   0.072
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    27   2.7  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   4.7  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +2

Query: 530 WNCKFVHYYDSILYFYNHKFRQDYTIKNINKNKQYLIYSQFDHRRQDQ 673
           W C  +  +   ++     FR+ Y + NI   K   +YS  +H +Q +
Sbjct: 189 WTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYSDLEHGKQSR 236


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 340 ARGEMRCKSP-LTIISLYLY*TNKSEQFIFKYTFLEKQSDYPNQLRYYNK 486
           AR   RC  P L  +  Y       E+F FK + + K +D+ N   YY K
Sbjct: 776 ARALARCAIPELDWVGYYHLRMAYLEKFCFKDSTIPKSNDFSNITEYYVK 825


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 433 TFLEKQSDYPNQLRYYNKEL 492
           ++LEKQSDY   L  Y K+L
Sbjct: 178 SYLEKQSDYSELLDNYKKQL 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,858
Number of Sequences: 5004
Number of extensions: 61058
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)