Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0222
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    29   4.9  
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727     28   8.6  
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920...    28   8.6  

>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 515 NFDYCGTSSSLL*YRN*FG*SLCFSKKVYLNMNCSDLFVQYRYRLIIVSG 366
           +F  CG++S      N        +KK++L + CSDLF +  Y L   SG
Sbjct: 574 SFPICGSTSDSTKSNN----EASLTKKIHLPLQCSDLFKRCNYVLNWCSG 619


>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
          Length = 706

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +2

Query: 80  LKLSVSNIRRISTIISFVYHFSSTYIVTPLRFSVKMKPIFSTLRRNRTTIVNAICISFVV 259
           + LS S +R ++ I +F Y+ S        RF+ K  P   +   N+ T++    ++++ 
Sbjct: 92  ISLSRSTLRVLNGISTFCYNASGLMGGVHFRFNAKNTPFRFSDVYNKFTVIGCNTLAYIA 151

Query: 260 D 262
           D
Sbjct: 152 D 152


>01_01_1157 -
           9203448-9203560,9204725-9204768,9205345-9205433,
           9205565-9205609,9205805-9205912,9206003-9206088,
           9206492-9206579,9206725-9206910,9207181-9207256,
           9207332-9207381,9207715-9207777,9207882-9207962,
           9208028-9208130,9208246-9208348,9208489-9208549,
           9209059-9209154,9209185-9209225,9209848-9209922,
           9210412-9210562
          Length = 552

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 239 ICISFVVDVSLLGMCWISKALHMH 310
           +CIS +  V+LL   W+ + LH H
Sbjct: 283 LCISLLAIVALLASFWLPETLHKH 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,463,455
Number of Sequences: 37544
Number of extensions: 303240
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)