Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0222
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)                       32   0.54 
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.54 
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         29   3.8  
SB_56884| Best HMM Match : Amb_V_allergen (HMM E-Value=4.5)            29   5.0  
SB_11030| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-16)                 29   5.0  
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               28   6.6  
SB_28726| Best HMM Match : 7tm_1 (HMM E-Value=3e-09)                   28   8.8  

>SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)
          Length = 1034

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 596 DYTIKNINKNKQYLIYSQFDHRRQDQKFA 682
           D TI +  KN Q L+Y +  HR  D+K A
Sbjct: 809 DKTISDAEKNLQMLVYDEAKHREMDEKMA 837


>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 717

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 341 PVEKCDVNHHSRLSVYICTERINPNNSYLNILSWR 445
           P     +NHH+ +++ +CT RI P   YL+ L ++
Sbjct: 250 PCVPIGLNHHTFINIALCTNRIKPQYLYLHSLVYQ 284


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 VFLLLWTSAC*ACVGFPKPFICITFT 320
           V  LL TS+C  CVG    F C+ FT
Sbjct: 608 VSFLLKTSSCVKCVGVNSTFHCVNFT 633


>SB_56884| Best HMM Match : Amb_V_allergen (HMM E-Value=4.5)
          Length = 167

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 452 LCFSKKVYLNMNCSDLFVQYRYRLIIVSGDLHR 354
           LCF     L  +C  L   YR +L I+    HR
Sbjct: 83  LCFGNTAILRSSCQLLVTNYRLKLSIIKEPFHR 115


>SB_11030| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-16)
          Length = 304

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 137 HFSSTYIVTPLRF-SVKMKPIFSTLRRNRTTIVNAICISFVVDVSLLGMCWISKALHMHH 313
           + S+   VT  RF +V+   +++T  R    ++  +  +F +  SLL + W S A H  H
Sbjct: 81  NISTLLAVTLDRFVAVRHLLLYTTFMRKYFWVIVGVSWAFPIAASLLPLIWDSDATHFAH 140


>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 506

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
 Frame = +2

Query: 155 IVTPLRFSVKMKPIFSTLRRNRTTIVNA----ICISFVVDVSLLGMCWISKALHMHHIHN 322
           I   L  +V ++ +  TL RN  +I       I I   + VSL+  CW+   L++HH ++
Sbjct: 238 ITVLLAMAVFLQLVAETLPRNSESIPLLGRFYITIMTEIAVSLMATCWV---LNIHHRNS 294

Query: 323 STRFL*PVEK-CDVNHHSRLSVYICTER 403
            T  +  + K  DV     L+V +C  +
Sbjct: 295 GTTLVVEMPKWVDVIVLRWLAVVLCVRQ 322


>SB_28726| Best HMM Match : 7tm_1 (HMM E-Value=3e-09)
          Length = 409

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 119 IISFVYHFSSTYIVTPLRFSVKMKPIFSTLRRNRTTIVNAICISFVVDVSLLGMCWIS 292
           +I F+  F+STYI   L F   +  +  T  +   T+   I   F+  V  LG+ WI+
Sbjct: 88  MIVFLLGFASTYICLLLAFDRWVAVVRPTRYKQVFTVRKTIVGVFLSYVIALGLVWIA 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,547,160
Number of Sequences: 59808
Number of extensions: 419443
Number of successful extensions: 914
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)