Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0222
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbona...    28   5.8  
U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbona...    28   5.8  
U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbona...    28   5.8  
AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transpo...    28   5.8  
U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbonate
            transporter familyprotein 3, isoform a protein.
          Length = 959

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 285  GF-PKPFICITFTIVLVFFSPWRNAM*ITTHDYQSISVLN 401
            GF P PFI + F IV  FF P R+ +     DY+ +  L+
Sbjct: 917  GFSPYPFIEMVFPIVCFFFLPIRHTLIPRLIDYKYLDALD 956


>U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform b protein.
          Length = 797

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 285 GF-PKPFICITFTIVLVFFSPWRNAM*ITTHDYQSISVLN 401
           GF P PFI + F IV  FF P R+ +     DY+ +  L+
Sbjct: 755 GFSPYPFIEMVFPIVCFFFLPIRHTLIPRLIDYKYLDALD 794


>U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform c protein.
          Length = 826

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 285 GF-PKPFICITFTIVLVFFSPWRNAM*ITTHDYQSISVLN 401
           GF P PFI + F IV  FF P R+ +     DY+ +  L+
Sbjct: 784 GFSPYPFIEMVFPIVCFFFLPIRHTLIPRLIDYKYLDALD 823


>AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transporter
            ABTS-3 protein.
          Length = 959

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 285  GF-PKPFICITFTIVLVFFSPWRNAM*ITTHDYQSISVLN 401
            GF P PFI + F IV  FF P R+ +     DY+ +  L+
Sbjct: 917  GFSPYPFIEMVFPIVCFFFLPIRHTLIPRLIDYKYLDALD 956


>U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical
           protein T19D7.4 protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 548 HYYDSILYFYNHKFRQDYTIKNINKNKQ 631
           H +D ILYFYN K  +D T   + K  Q
Sbjct: 492 HIWDVILYFYNLKTGRDTTDAPVRKLSQ 519


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,835,935
Number of Sequences: 27780
Number of extensions: 330706
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)