Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0222
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   6.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.7  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 487 PY-YNTVIDLDNHSVSPRKYXXXXIVRIYSFSTDI 386
           PY +  VID  N ++S R+Y     V  + +S +I
Sbjct: 239 PYIFQEVIDYGNEAISKREYNGIGAVIEFKYSYEI 273


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 115 NHYQFRLSLFKYIYCNSIK 171
           N+Y +  + +K +YCN+ K
Sbjct: 87  NNYNYNNNNYKKLYCNNYK 105


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 115 NHYQFRLSLFKYIYCNSIK 171
           N+Y +  + +K +YCN+ K
Sbjct: 87  NNYNYNNNNYKKLYCNNYK 105


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 115 NHYQFRLSLFKYIYCNSIK 171
           N+Y +  + +K +YCN+ +
Sbjct: 87  NNYNYNNNNYKKLYCNNYR 105


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 297 PFICITFTIVLVFFSP 344
           P + ITF  VLVF+ P
Sbjct: 259 PCVGITFLTVLVFYLP 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,208
Number of Sequences: 438
Number of extensions: 4772
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)