Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0220
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    44   8e-06
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    30   0.11 
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    27   0.78 
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    27   1.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   3.1  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    25   5.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    24   9.6  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 44.0 bits (99), Expect = 8e-06
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
 Frame = +3

Query: 171 QIGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCI 335
           ++ G KNGG R V P  +    +YP  +E +  +A    RP      ++R +L  GTVCI
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCI 59

Query: 336 LLAGRHAGKKVVLVGIL 386
           LLAGR  GK+VV++  L
Sbjct: 60  LLAGRFRGKRVVVLSQL 76


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 379 PTSTTFLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 245
           P S+   P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 312 LKIGTVCILLAGRHAGKKVVLV 377
           LK G V ++  GR AGKKVV++
Sbjct: 5   LKPGKVALITRGRFAGKKVVIL 26


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 312 LKIGTVCILLAGRHAGKKVVLV 377
           LK G V ++  GR AGKKVV++
Sbjct: 5   LKPGKVALVTRGRFAGKKVVIL 26


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 20  STKKPRNYDLGNGVMRFSKSKMF 88
           +TK PRN+ L N ++RFS   +F
Sbjct: 289 NTKGPRNFVLENHLVRFSSLYIF 311


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 76  IQDVPQXRLNTSSLAK 123
           +QDVPQ RL++S L K
Sbjct: 245 LQDVPQRRLDSSELLK 260


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 223 LRLRGTVLVPPFFSPPICFT 164
           + L  TV  P FF+P +C+T
Sbjct: 302 VELAKTVGTPAFFAPELCWT 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,331
Number of Sequences: 5004
Number of extensions: 27977
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)