Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0220
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 36 0.015
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 33 0.079
02_02_0470 - 10700092-10700505 29 1.3
10_08_0951 - 21769342-21769752 28 3.0
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 27 5.2
11_06_0521 + 24544254-24544964 26 9.1
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 26 9.1
01_01_0984 + 7779251-7779329,7779354-7780054 26 9.1
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 35.5 bits (78), Expect = 0.015
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +3
Query: 186 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 350
KNGGT K FYP + K RA S + + ++R + GTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87
Query: 351 HAGKKVVLV 377
+ GK+VV +
Sbjct: 88 YMGKRVVFL 96
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 33.1 bits (72), Expect = 0.079
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 237 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKKVVLV 377
PT+ + +SS FS + + +R ++ GTV ILLAGR GK+VV +
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFL 119
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 312 LKIGTVCILLAGRHAGKKVVLVGI 383
LK G ILL GR+AG+K V+V +
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRV 28
>10_08_0951 - 21769342-21769752
Length = 136
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 312 LKIGTVCILLAGRHAGKKVVLVGI 383
LK G ILL GR AG+K V+V +
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRV 28
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 176 WR*EEWGNQNSTPQT*EV--LLPHSGENPCFIWWP 274
W+ E Q+++P ++ L H+G+ C +WWP
Sbjct: 86 WKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWP 120
>11_06_0521 + 24544254-24544964
Length = 236
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 171 QIGGEKNGGTRTVPLKRRKSFYPTQEKI 254
Q+GG+ +GG +T P RR P I
Sbjct: 174 QLGGDHDGGQQTKPPARRPGLRPRMPSI 201
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 291 VRRIRPNLKIGTVCILLAGRHAGKK 365
+RR RP L + + +L AG GKK
Sbjct: 4 IRRFRPALLLAAILLLAAGAVEGKK 28
>01_01_0984 + 7779251-7779329,7779354-7780054
Length = 259
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 236 PHSGENPCFI-WWPSIQQACTQDPTQPEDRNCL 331
P SG PC WW ++ ++ + TQ E CL
Sbjct: 57 PRSGVTPCSGGWWGTLCKSSSAPDTQLEKLKCL 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,724,355
Number of Sequences: 37544
Number of extensions: 215302
Number of successful extensions: 449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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