Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0220
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    33   0.053
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    30   0.65 

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 33.5 bits (73), Expect = 0.053
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 300 IRPNLKIGTVCILLAGRHAGKKVVLV 377
           +R  L  GTV I+LAGRH GK+VV +
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFL 92



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 35  RNYDLGNGVMRFSKSKMFHKXG 100
           RN+DL  GV+RFS S++  K G
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKG 33


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 231 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKK 365
           FYPT+   +A S G P +       PN ++  V    A RHAG +
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,795,046
Number of Sequences: 27780
Number of extensions: 167616
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)