Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0220
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   8.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 2   AVTKKKSTKKPRNYDLGNGVM 64
           +VT  K    PR YD  NG++
Sbjct: 271 SVTTSKMMVSPRLYDRQNGLV 291


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +2

Query: 233 LPHSGENPCFIWWPSIQQACTQDPTQ 310
           +P   +NP    W     AC+  P Q
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQ 398


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 208 YPSNVGSPSTPLRRKSVL 261
           YP  +G+PST +  K  L
Sbjct: 845 YPPVIGTPSTGMMYKPFL 862


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,194
Number of Sequences: 438
Number of extensions: 1994
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)