Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0220
         (388 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    36   0.007
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    36   0.007
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    33   0.050
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   0.62 
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    28   2.5  
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)            27   3.3  
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)            27   4.4  
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi...    27   4.4  
At5g65400.1 68418.m08225 expressed protein contains Pfam profile...    26   7.6  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 36.3 bits (80), Expect = 0.007
 Identities = 19/56 (33%), Positives = 34/56 (60%)
 Frame = +3

Query: 210 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKKVVLV 377
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GK+VV +
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFL 110


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 36.3 bits (80), Expect = 0.007
 Identities = 19/56 (33%), Positives = 34/56 (60%)
 Frame = +3

Query: 210 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKKVVLV 377
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GK+VV +
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFL 110


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 33.5 bits (73), Expect = 0.050
 Identities = 18/56 (32%), Positives = 33/56 (58%)
 Frame = +3

Query: 210 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKKVVLV 377
           P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GK+VV +
Sbjct: 57  PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFL 110


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 210 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 299
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 176 WR*EEWGNQNSTPQT*EV--LLPHSGENPCFIWWPS 277
           W+  E   Q ++PQ   V  L  H G+  C +WWPS
Sbjct: 96  WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 
          Length = 135

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 312 LKIGTVCILLAGRHAGKKVVLV 377
           +K G   ILL GR+ GKK V+V
Sbjct: 5   MKPGKAVILLQGRYTGKKAVIV 26


>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
          Length = 135

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 312 LKIGTVCILLAGRHAGKKVVLV 377
           LK     ILL GR+AGKK V++
Sbjct: 5   LKQNKAVILLQGRYAGKKAVII 26


>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
           to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
           tuberosum]
          Length = 135

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 312 LKIGTVCILLAGRHAGKKVVLV 377
           LK     ILL GR+AGKK V++
Sbjct: 5   LKQNKAVILLQGRYAGKKAVII 26


>At5g65400.1 68418.m08225 expressed protein contains Pfam profile:
           PF03959 domain of unknown function (DUF341) contains
           Pfam profile: PF03959 domain of unknown function
           (DUF341)
          Length = 252

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 241 VG*KDFLRLRGTVLVPPFFSPPI 173
           +G +DFL++ G VLV  F  P +
Sbjct: 188 IGERDFLKIEGEVLVESFVEPVV 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,400,953
Number of Sequences: 28952
Number of extensions: 161788
Number of successful extensions: 362
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)