Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0211
         (748 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2RI54 Cluster: Signal transduction histidine kinase re...    33   7.5  
UniRef50_Q3S865 Cluster: Modular polyketide synthase; n=7; root|...    33   7.5  

>UniRef50_Q2RI54 Cluster: Signal transduction histidine kinase
           regulating citrate/malate metabolism; n=1; Moorella
           thermoacetica ATCC 39073|Rep: Signal transduction
           histidine kinase regulating citrate/malate metabolism -
           Moorella thermoacetica (strain ATCC 39073)
          Length = 277

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 589 LFCILLLQNNVDFTSARGPVRLIFFSVVAIFFPQL 485
           LF  LLL  N  FTS R PV ++ F+++A+    L
Sbjct: 16  LFLFLLLAYNYVFTSFRIPVTIVLFAIIAVMISSL 50


>UniRef50_Q3S865 Cluster: Modular polyketide synthase; n=7; root|Rep:
            Modular polyketide synthase - Streptomyces neyagawaensis
          Length = 4825

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 662  SGLALPLALLKSMGD-GNPSRLWAVRSSA 745
            +GLAL L LL+++GD G+ +RLW V S A
Sbjct: 2665 AGLALTLTLLQALGDTGSRARLWCVTSGA 2693


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,943,789
Number of Sequences: 1657284
Number of extensions: 12280036
Number of successful extensions: 23786
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23782
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)