Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0206
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 27 1.8
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 2.4
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 26 2.4
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 3.1
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 5.5
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 25 5.5
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 25 7.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 24 9.6
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 24 9.6
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 24 9.6
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 24 9.6
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 24 9.6
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 301 RTSQRE*HSTLPRGHHGSALAHHHERQR-SRHGK 399
RTS + + T +H HHH R R S+HG+
Sbjct: 9 RTSTHKFNETDRETNHSRRHRHHHSRHRESKHGR 42
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 2.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 13 QIEMTDTTFKTISNLTIEATRFENGQKFHCEAANEV 120
Q +T TT K + NLT + ENGQ A+ +
Sbjct: 520 QEPLTATTPKNLGNLTAISETLENGQTLKSNMASSI 555
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 2.4
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = -2
Query: 285 NTALRDEGLLSYSHLRSSFEPSITVMFFGSTRTIGGYQISSSPGGVHGMILCLDGDLIGS 106
++A LLSY+ + S V GS Q +HG+ L + GD +G+
Sbjct: 185 DSATESSPLLSYTGNHNGAGTSKPVNNHGSIEQDAPKQTKKRNLNMHGVFLHVLGDALGN 244
Query: 105 LAVKFLAVF 79
+ V A+F
Sbjct: 245 IGVISAALF 253
>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 25.8 bits (54), Expect = 3.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 131 QRIIPCTPPGELEIWYPP 184
Q+ I CTP G + +W PP
Sbjct: 86 QKPITCTPMGPICLWAPP 103
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 5.5
Identities = 9/38 (23%), Positives = 26/38 (68%)
Frame = -1
Query: 448 VLAGAVSNRIRQQASIVSHVDSSGVHDDERVLIRGAPL 335
+L+ + + + Q+ ++++ +++ G+H++ER+ I PL
Sbjct: 414 ILSVKIHHIVVQKLNVITVLNNYGIHNEERLSIVFKPL 451
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 25.0 bits (52), Expect = 5.5
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +1
Query: 220 RRLKTAPQM*IRKQPFISKRRILVPGWRTSQRE*HSTLPRGHHGSALAHHHERQRSRHGK 399
R+ PQ+ RKQ R+L + +RE HS+ R SAL R+ R K
Sbjct: 108 RQQTDPPQIIHRKQDKGLMARVLSRSKKQEERENHSSDARDAIKSALRRRMRRREGRVQK 167
Query: 400 LYLP 411
P
Sbjct: 168 ALRP 171
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2
Query: 101 ARLPMRSPSRQRIIPCTPPGELEIWYPP 184
+R P Q +P P +E WYPP
Sbjct: 186 SRYPRVFVDSQLPVPKAAPSPIEEWYPP 213
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.2 bits (50), Expect = 9.6
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -2
Query: 237 SSFEPSITVMFF--GSTRTIGGYQISSSP 157
SSF PS + GST T G +SSSP
Sbjct: 265 SSFTPSYSTNLTTTGSTTTTGSATVSSSP 293
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 24.2 bits (50), Expect = 9.6
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = +1
Query: 388 RHGKLYLPADEFCWKRHQRGQHR 456
RH +++ + CWK+ +R + R
Sbjct: 626 RHSLVFVSSSNECWKKAKRAKRR 648
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 24.2 bits (50), Expect = 9.6
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 161 ELEIWYPPIVRVEPKNITVIEGSKLLLKCEYESNPSSLSAVFWFRDGERVNV-NDTAHYQ 337
E +I YP ++ + PK+ S L K + S + V DG+++ N+ A Y+
Sbjct: 155 EQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKELIDGQKILFENEEALYK 214
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 321 SFTLTRSPSRNQNTALRDEGLLSYSHLRSSFEP 223
+FTL+ SP ++A +S H SF P
Sbjct: 97 TFTLSVSPDSQSSSATHQNDYISSPHADFSFSP 129
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 35 LSKRFPI*RSKQRALKTARNFTARLPMRSPSRQRII 142
LS FP+ Q ++K +N L RSP RI+
Sbjct: 636 LSNDFPLSLLTQASMKATKNAVFSLYKRSPKSFRIL 671
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,344
Number of Sequences: 5004
Number of extensions: 40635
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -