Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0206
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0439 - 17594131-17594271,17595018-17595100,17595199-175953... 30 0.77
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 1.8
03_05_0535 + 25352283-25352562,25352661-25352788,25352928-253530... 29 1.8
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306 29 2.3
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 29 2.3
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 28 3.1
03_05_1016 + 29726949-29727503,29728863-29729504 28 4.1
01_06_0062 - 26088946-26089136,26089261-26089294 28 4.1
06_03_0974 - 26459747-26460190,26460278-26460946 27 5.4
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 27 7.2
07_03_0069 + 13041063-13041577,13041647-13042231,13042285-13042540 27 7.2
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 27 7.2
02_02_0310 - 8842286-8843314 27 7.2
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828... 27 7.2
10_08_0147 + 15218150-15218401,15218569-15218643,15219099-152192... 27 9.5
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 27 9.5
02_03_0202 + 16359539-16359763,16360113-16360193,16361362-163616... 27 9.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 27 9.5
>09_04_0439 -
17594131-17594271,17595018-17595100,17595199-17595355,
17595438-17595576,17595668-17595720,17596150-17596257,
17596345-17596413,17596505-17596570,17596651-17596794,
17597372-17597455,17597539-17597637,17597753-17597875,
17598283-17598831
Length = 604
Score = 30.3 bits (65), Expect = 0.77
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Frame = +2
Query: 113 MRSPSRQRIIPCTPPGELEI-WYPPIVRVEPKNITVIE-GSKLLLKCEYESN--PSSLSA 280
M +R ++ P L + WY + K++ V+ LLL Y SL
Sbjct: 347 MDEETRNTVVKENPAALLALCWYWASEGIGNKDMVVLPYKDSLLLLSRYLQQLVMESLGK 406
Query: 281 VFWFRDGERVNVNDTAHYQGGTTDQHSLIIMNARGV 388
F DG RVN T + G+TDQH+ I GV
Sbjct: 407 EFDL-DGNRVNQGLTVYGNKGSTDQHAYIQQLREGV 441
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 283 ILVPGWRT-SQRE*HSTLPRGHHGSALAHHHERQRSRH 393
+LV WR R+ H + HH HHH+RQR H
Sbjct: 116 VLVRRWRPRDHRDQHDHQSQRHHHRH--HHHQRQRHHH 151
>03_05_0535 +
25352283-25352562,25352661-25352788,25352928-25353081,
25353182-25353379,25353467-25353618
Length = 303
Score = 29.1 bits (62), Expect = 1.8
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Frame = +2
Query: 125 SRQRIIPCTPPGELEIWYPPIVRVEPKN---ITVIEGSKLLL-KCEYESNPSSLSAVFWF 292
+R I CT + + PP + N +TV SKLLL +S + AVF
Sbjct: 125 TRTTIYTCTNFSIVIFFLPPTAVIPLHNHPGMTVF--SKLLLGSLHIKSYDWAEPAVFAA 182
Query: 293 RDGERVNVNDTAHYQGGTTDQHSLIIMNARGVDMGNYT----CLLTNSVGNGTSED 448
G+R+ + + G + +L++ A G +M +T C L + +G SED
Sbjct: 183 GSGDRLRLAEVVRDGGFSAPSDTLVLYPAAGGNMHQFTAATPCALLDVLGPPYSED 238
>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
Length = 387
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 46 ISNLTIEATRFENGQKFHCEAANEVTIETKDHPMHAT 156
+SN++ + F GQ + +E T+ET D P AT
Sbjct: 31 VSNMSFKMKEFFQGQNMADKIVDEATLETMDAPDWAT 67
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 296 DGERVNVNDTAHYQGGTTDQHSLIIMNARGV 388
DG RVN T + G+TDQH+ I GV
Sbjct: 402 DGNRVNQGLTVYGNKGSTDQHAYIQQLREGV 432
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 40 KTISNLTIEATRFENGQKFHCEAANEVTIE 129
KT+ N T+ A F N F CEA V ++
Sbjct: 1200 KTVGNSTMRAVAFSNEGTFICEAFGRVEVD 1229
>03_05_1016 + 29726949-29727503,29728863-29729504
Length = 398
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 208 VFRFNTNYRRIPNF*FSWWRAWDDP 134
+F FNT YR + N S+ A+DDP
Sbjct: 224 IFNFNTTYRYLQNSSQSFVMAFDDP 248
>01_06_0062 - 26088946-26089136,26089261-26089294
Length = 74
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 103 EAANEVTIETKDHPMHATRRTRNLVSADSSC 195
E E T+ + H +HATRRTR + +C
Sbjct: 19 EEKTENTVGMRSHALHATRRTRCHQLLEENC 49
>06_03_0974 - 26459747-26460190,26460278-26460946
Length = 370
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 352 SALAHHHERQRSRHGKLYL 408
+A HHH +QR +HG L L
Sbjct: 131 AAAEHHHHQQRQQHGALNL 149
>07_03_0627 -
20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 295 GWRTSQRE*HSTLPRGHHGSALAHHHERQ 381
GW+ S H TL G HHH++Q
Sbjct: 7 GWKRSSEIFHLTLDYGDLADGPPHHHQQQ 35
>07_03_0069 + 13041063-13041577,13041647-13042231,13042285-13042540
Length = 451
Score = 27.1 bits (57), Expect = 7.2
Identities = 22/82 (26%), Positives = 34/82 (41%)
Frame = +2
Query: 77 LKTARNFTARLPMRSPSRQRIIPCTPPGELEIWYPPIVRVEPKNITVIEGSKLLLKCEYE 256
LK + + RL R+P R +P + PG PP N + I + L L+C
Sbjct: 304 LKKHKQYKPRLQPRAPRAPRTVPSSHPGASSSPAPPPPHGYDPNASFIL-TMLTLECNPM 362
Query: 257 SNPSSLSAVFWFRDGERVNVND 322
+ + A+ G R +V D
Sbjct: 363 NTSTRHEALHEDVRGLRTDVGD 384
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 27.1 bits (57), Expect = 7.2
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 112 NEVTIETKDHPMHATRRTRNLVSADSSC*TEKHHSDRRLKTAPQM*IRKQPFISKRRILV 291
+EV I+T+ HP R+ + V+ S + DR + P+ RK+ KR +
Sbjct: 418 SEVDIDTRKHPKREHRKKKRDVTESYSSSDSEVEVDRDTRRHPKREHRKE----KRNMTE 473
Query: 292 PGWRTSQRE*H 324
G + RE H
Sbjct: 474 NGHSSRSREKH 484
>02_02_0310 - 8842286-8843314
Length = 342
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 307 SQRE*HSTLPRGHHGSALAHHHERQRSRH 393
++ E + R HHG HHH R H
Sbjct: 169 AEEEDEDEMARLHHGRRSHHHHHRHHHHH 197
>01_06_0905 +
32880368-32880633,32882439-32882568,32882704-32882894,
32883625-32883852,32884062-32884224,32884343-32884416,
32884484-32884601,32884722-32884788,32885152-32885223,
32885350-32885513
Length = 490
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 343 HHGSALAHHHERQRSRHGK 399
H G A+ H ER R+RHG+
Sbjct: 42 HKGVAVEHLRERDRARHGR 60
>10_08_0147 +
15218150-15218401,15218569-15218643,15219099-15219208,
15219299-15219560
Length = 232
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +2
Query: 47 FPI*RSKQRALKTARNFTARLPMRSPSRQRIIPCTPPGELEIWYPPIVRVEPKNITV 217
F + + ++A++ AR + SRQ ++ T P E W P +R++ K++ +
Sbjct: 100 FHVSKRIRKAVELARQYHFNYTTPDRSRQELLQHTTPLPTEHW--PFMRIDGKDVRI 154
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 266 SSLSAVFWFRDGERVNVNDTAHY 334
S S FWF GER DT H+
Sbjct: 340 SRSSVFFWFEVGERHLARDTVHF 362
>02_03_0202 +
16359539-16359763,16360113-16360193,16361362-16361600,
16361828-16362029,16362108-16362188,16362272-16362455,
16362625-16362791,16363020-16363802
Length = 653
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 240 RSSFEPSITVMFFGSTRTIGGYQISSSPGGVHGMILCLDGDLIGSLAV 97
R PS+ F G + Q+SSS V G+ L L+G LA+
Sbjct: 371 RKGSYPSLQFRFLGPKLQVSTSQVSSSHKPVVGLRLYLEGRKCNRLAI 418
>02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 230 KLLLKCEYESNPSSLSAVFWFRDGERV-NVNDTAHYQGGTTDQHSLII 370
KLL KCE + P ++ ++ +RD V ++ ++ HY D++ L I
Sbjct: 988 KLLRKCENKLFPRTIVSIHTYRDRIYVGDMQESFHYCKYRRDENQLYI 1035
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,231,158
Number of Sequences: 37544
Number of extensions: 294441
Number of successful extensions: 835
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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