Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0206
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61080.1 68418.m07664 expressed protein predicted proteins, A...    31   0.37 
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)...    27   4.5  
At4g23180.1 68417.m03344 receptor-like protein kinase 4, putativ...    27   4.5  
At3g17370.1 68416.m02220 pentatricopeptide (PPR) repeat-containi...    27   4.5  
At4g24970.1 68417.m03578 ATP-binding region, ATPase-like domain-...    27   7.9  
At4g00620.1 68417.m00086 tetrahydrofolate dehydrogenase/cyclohyd...    27   7.9  
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c...    27   7.9  

>At5g61080.1 68418.m07664 expressed protein predicted proteins,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 348

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 104 RLPMRSPSRQRIIPCTPPGELEIWYPPIVRV 196
           + P RSP + +     PPG  +IW PP+V++
Sbjct: 167 KTPSRSPEKVKGEASVPPGFEKIWTPPLVKL 197


>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
           identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
          Length = 626

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 89  RNFTARLPMRSPSRQRIIP-CTPPGELEIWYPPIVRVEPKNITVIEGSKLLLKCEYESNP 265
           RN  A LP    S    IP C   G LE    P    E  +I V++ + LLL   YE N 
Sbjct: 166 RNALAGLPEILVSTPACIPKCFAAGVLE----PTAVSESLSILVLDEADLLLSYGYEDNL 221

Query: 266 SSLSAV 283
            S++++
Sbjct: 222 RSVTSI 227


>At4g23180.1 68417.m03344 receptor-like protein kinase 4, putative
           (RLK4) nearly identical to receptor-like protein kinase
           4 [Arabidopsis thaliana] GI:13506745; contains Pfam
           domain, PF00069: Protein kinase domain; identical to
           cDNA receptor-like protein kinase 4 (RLK4) GI:13506744
          Length = 669

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 327 AVSFTLTRSPSRNQNTALRDEGLLSYSH 244
           AV+ TLTR P++ + T   DE +L YS+
Sbjct: 112 AVNDTLTRCPNQKEATLYYDECVLRYSN 139


>At3g17370.1 68416.m02220 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 212

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = +1

Query: 10  RQIEMTDTTFKTISNLTIEATRFENGQKFHCE------AANEVTIETKDH 141
           R++  + +TF T+ N   +ATR ++G    CE       AN +T  T  H
Sbjct: 100 RKVSKSCSTFNTLINGYCKATRVKDGMNLFCEMYRRGIVANVITYTTLIH 149


>At4g24970.1 68417.m03578 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 707

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 309 TRSPSRNQNTALRDEGLLSYSHLRSSFEPSITV 211
           +R P ++  ++ +  GLLSY+ LRS+ +  I V
Sbjct: 270 SRCPGKDGKSSTQSIGLLSYTFLRSTGKEDIVV 302


>At4g00620.1 68417.m00086 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
           (C1-THF synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
           contains Pfam profiles PF02882: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
           PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           catalytic domain
          Length = 360

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 104 RLPMRSPSRQRIIPCTPPGELEIWYPPIVRVEPKNITVIEGSKLL 238
           RL MR       +PCTP G +E+ +   + ++ K   VI  S ++
Sbjct: 196 RLAMRG-REPLFVPCTPKGCIELLHRYNIEIKGKRAVVIGRSNIV 239


>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
           checkpoint protein, putative contains 5 WD-40 repeats
           (PF00400) (1 weak); similar to testis mitotic checkpoint
           protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
          Length = 340

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 209 ITVIEGSKLLLKCEYESNPSSLSAVFWFRDGERVNVNDTAHYQGGTTDQ 355
           + + +G+      +Y   P+S+SA+ + RDG+ + V  +  ++ G   Q
Sbjct: 265 VNIWDGNNKKRLYQYSKYPTSISALSFSRDGQLLAVASSYTFEEGEKSQ 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,378,336
Number of Sequences: 28952
Number of extensions: 228117
Number of successful extensions: 629
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)