Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0205
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    28   0.062
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    26   0.33 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.8  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    21   7.1  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.4  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 28.3 bits (60), Expect = 0.062
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 540 HTGSGLATGPDFGSGNCSVALE 475
           H G+G   GPD G GN SV ++
Sbjct: 309 HAGNGWQWGPDAGLGNLSVCID 330


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 383 NPRTVSKLRPTIRESIPSAEPKLPRS--GSKSVSRATEQFPE 502
           +PRT    +P  ++  P+AE K PR+      ++R   +F E
Sbjct: 208 SPRTRRVKKPGAKQGAPTAEEKRPRTAFSGAQLARLKHEFAE 249


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 175 LNRKRKCKEISSTQHGLHPPTKPTRVSRN 261
           +NR  +  E+   Q   +PPTKP    R+
Sbjct: 534 INRHLRGNELLPMQQSQNPPTKPYGTCRS 562


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
 Frame = -2

Query: 654 YCVHTAQLAL----VIDFDYYQHIGLDSEIGP 571
           Y  H   LAL     IDF+YY +    +  GP
Sbjct: 45  YVKHFHPLALSNKNAIDFNYYYYAATYARFGP 76


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +2

Query: 374 WVSNPRTVSK 403
           W+ NPRT+++
Sbjct: 464 WIQNPRTITE 473


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -1

Query: 271 WNCDCD 254
           W+CDCD
Sbjct: 708 WSCDCD 713


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,985
Number of Sequences: 336
Number of extensions: 2942
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)