Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0205
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 29 0.83
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 28 1.1
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.1
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 28 1.4
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.4
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.5
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 27 2.5
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 26 5.8
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 7.7
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 7.7
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 28.7 bits (61), Expect = 0.83
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 395 VSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPK 508
+++ PT + PS P S KSV+RA+E P K
Sbjct: 194 ITEANPTCEKRKPSRSPSPMLSKKKSVARASENEPSAK 231
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +2
Query: 431 PSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRAGPISESSP 595
P ++ +L S + S T Q P+ RPEP+ S CP P P
Sbjct: 117 PLSDSQLDTGDSPATSETTVQDYNPQVQSYCRPEPLSSNHVRSCPPFPPTQHHHP 171
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +1
Query: 115 SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISI 288
S+ L S A K Q+ P K R+R S + GL+P PT S+ RS + S+
Sbjct: 342 SLSPLDHSSAEKEMQKAPAKNKRRRT----GSLETGLYPKESPT-PSKKRSKRVLWSL 394
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 353 SKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPR---SGSKSVSRATEQFPEPKSGPV 520
+KPG+ V + K + + + S E K+ R S S+S+S TEQ PK PV
Sbjct: 150 TKPGEPE-VKQETNLQKEKKESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPKIQPV 207
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 148 KTSQRKPIKLNRKRKCKEISSTQHGLHPP--TKPTRVSRNRSSKAK 279
K + P K ++KRK E+S LH P + + +N++ K K
Sbjct: 140 KMEVKAPAKESKKRKVNELSQDVISLHSPKESNARKTKKNKNKKKK 185
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 392 TVSKLRPTIRESIPSAEPKLPRSGSKSVS 478
TVS P+ E PS+ P LP +GS+S S
Sbjct: 114 TVSIASPSTPELPPSSSPLLPPNGSESSS 142
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.1 bits (57), Expect = 2.5
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = +2
Query: 350 NSKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARP 529
+SKP + V +PT S PSA P +S ++ P + A+P
Sbjct: 273 HSKPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAE----AKP 328
Query: 530 EPVWSEPT*LCPRAGPISESSPI 598
EPV P RA P SES+ +
Sbjct: 329 EPV---PASAAERA-PTSESTTV 347
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 139 KATKTSQRKPIKLNRKRKCKEISSTQHGL---HPPTKPTRVSRNRSSKAKISI 288
+ TKT R+ K+ R+RK + +++ P KP SR K ++
Sbjct: 532 RVTKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVNYAL 584
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 546 SLHTGSGLATGPDFGSGNCSVALETDFE 463
S+H+ G D G+GN + LETD E
Sbjct: 15 SVHSREVSVNGSDSGTGNDAYKLETDDE 42
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 166 PIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIML 300
P +LNR R KE + LH +R + +SS SI++ L
Sbjct: 113 PKRLNRSRSSKEDMYRRRSLHGLPSLSRRNSKKSSTLSRSISLHL 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,881
Number of Sequences: 5004
Number of extensions: 49449
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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