Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0205
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.17 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.38 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   1.2  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    24   1.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.7  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 356 KPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPE 502
           +PG +  VS   ++ + +PT+ +  P+A+P++ R       R   Q P+
Sbjct: 714 QPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLA--EAVRTASQIPQ 760


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 32  CHTFSRTNQHNDSAVGTTKVLHI 100
           C+ F +TN   DS+ GTT +L +
Sbjct: 719 CNMFRKTNLSGDSSSGTTLLLEL 741


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 223 LHPPTKPTRVSRNRSSKAK 279
           L PPT+PTR+ R    +A+
Sbjct: 22  LDPPTRPTRLRREAKPEAE 40


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 223 LHPPTKPTRVSRNRSSKAK 279
           L PPT+PTR+ R    +A+
Sbjct: 23  LDPPTRPTRLRREAEPEAE 41


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 382 KPKDSFKTSPNNQGINSKRRTKITTVRLKISFKGNRTISRTKIR 513
           +P  S K+       N KR+ K +T+  +   + N + ++TK+R
Sbjct: 198 EPSSSTKSYVLEGPRNGKRKRKSSTIENESETESNASSTKTKMR 241


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 506 KSGPVARPEPVWS 544
           K GP+ RP P WS
Sbjct: 105 KGGPLLRPYPDWS 117


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 223 LHPPTKPTRVSRNRSSKAK 279
           L PPT+P R+ R    +A+
Sbjct: 23  LDPPTRPARLRREAKPEAE 41


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 594  GLDSEIGPALGHS*VGSLHTGSGLATGP 511
            G    +GP +GH    S H+ SG  + P
Sbjct: 1754 GHSGTMGPPVGHPTNASAHSRSGSQSMP 1781


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,470
Number of Sequences: 438
Number of extensions: 4031
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)