Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0200
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 30 2.0
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542... 29 3.4
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 29 3.4
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 28 6.0
01_07_0206 + 41990251-41992032,41992131-41992361 28 6.0
11_03_0049 - 9318578-9319312 28 7.9
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 28 7.9
04_03_0028 + 9698427-9698849,9698862-9699227 28 7.9
01_01_0693 + 5355081-5355106,5355969-5356056,5356079-5356141,535... 28 7.9
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +3
Query: 222 TGLLVEPLFSISSRGNPLLPTTSHSWSPARLCPLTPPI*LIRQRYSPVAA 371
TG+L+ L S +SR +P+ PT++ SPA P P L+R+ YS AA
Sbjct: 3 TGMLLRGLRSAASRTSPVFPTSAS--SPA---PYVSP--LLRRLYSAAAA 45
>04_04_1248 -
32051679-32052356,32053617-32053778,32054147-32054269,
32054686-32054793
Length = 356
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 212 TRLSGTPMLNSLKIKPLCQTLSNAFATSKKRAPVYNGFGRLSP 84
T LS +P L+ L +KP A T+K V G G LSP
Sbjct: 136 TNLSISPSLSLLHVKPRTSAKPTASTTAKNARRVGVGAGSLSP 178
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -2
Query: 287 GRGEERVPSTRYRKER-FDKKSRM-MSTRLSGTPMLNSLKIKPLCQTLSNAFATSKKRAP 114
G EE+ ++ +K FD + + M T SG +NS+ ++P+ + + ++ AP
Sbjct: 537 GSDEEQQETSNNKKTNGFDNTAAVSMDTLKSGDDSMNSVVVEPIKERVESSKTDVDTAAP 596
Query: 113 VYNGFGRLS 87
Y+ RLS
Sbjct: 597 FYSFVKRLS 605
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 269 PAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSP 394
P P + +++ +K + +PS L+ S F GR+ LYSP
Sbjct: 240 PRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKN---LYSP 278
>01_07_0206 + 41990251-41992032,41992131-41992361
Length = 670
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 412 YSSRNKSLIAKKLQSAALALGQWFRKWR 495
Y + +K+ ++K+ + + L LGQW WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299
>11_03_0049 - 9318578-9319312
Length = 244
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 352 DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWF 483
D+P +PP ++A D Y R+K ++ + + G W+
Sbjct: 148 DLPPAPPPYVAALLRDKAPYPMMRSKLVLRSEAMDGSTFGGYWY 191
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 121 LFFDVAKAFDKVWHNGLIFRLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAG 300
L D KAFD + H+ ++ + +MG P + ++ S S + G + G
Sbjct: 454 LKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRG 513
Query: 301 VPQG 312
V QG
Sbjct: 514 VRQG 517
>04_03_0028 + 9698427-9698849,9698862-9699227
Length = 262
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 179 LKIKPLCQTLSNAFATSKKRAPVY--NGFGRLSP 84
L++KPL Q L NAF K APV F ++ P
Sbjct: 226 LELKPLPQGLHNAFLHGDKEAPVVISTSFPKMKP 259
>01_01_0693 +
5355081-5355106,5355969-5356056,5356079-5356141,
5356607-5356705
Length = 91
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 28 RTNHSCVQQVHRLTEHILVGLN--RPKPLYTGALFFDVAKAFDKVWHNGLI 174
RTN CV++ + +LVG N K + G L VA D W G I
Sbjct: 21 RTNGKCVKETEAIRSELLVGENGINDKQIKKGLL---VASRVDGEWSRGTI 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,538,818
Number of Sequences: 37544
Number of extensions: 459859
Number of successful extensions: 1435
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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