Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0200
(684 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 135 5e-32
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 126 4e-29
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 126 4e-29
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 126 4e-29
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 123 3e-28
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 118 1e-26
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 118 1e-26
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 115 7e-26
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 112 4e-25
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 112 4e-25
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 109 3e-24
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 109 3e-24
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 109 3e-24
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 109 3e-24
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 109 3e-24
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 109 3e-24
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 102 5e-22
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 102 5e-22
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 102 5e-22
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 102 5e-22
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 88 1e-17
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 69 8e-12
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 51 1e-06
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 48 1e-05
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 47 3e-05
AY069347-1|AAL39492.1| 396|Drosophila melanogaster LD05576p pro... 32 0.64
AE014134-3030|AAF53752.1| 396|Drosophila melanogaster CG10495-P... 32 0.64
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 135 bits (327), Expect = 5e-32
Identities = 84/236 (35%), Positives = 118/236 (50%), Gaps = 8/236 (3%)
Frame = +1
Query: 1 ILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFR 180
IL D QFGFR HS V+QVHRLT+HIL + + Y A+F D+ +AFD+VWH+GLI +
Sbjct: 544 ILPDHQFGFRQGHSTVEQVHRLTKHILQAFDDKE--YCNAVFIDMQQAFDRVWHDGLISK 601
Query: 181 LFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP 360
+ + P +++ +L +R F RV + S PR + AGVPQG D+P
Sbjct: 602 VKKL-FPAPYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLP 660
Query: 361 RSPPTH--------LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAK 516
H LA +ADD + YSS + A+ LQ L W ++W + +NP K
Sbjct: 661 CPNAYHMADPRKALLATYADDIALLYSSNCCNEAARGLQEYLTTLAAWCKRWILKVNPQK 720
Query: 517 STAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
+ F +T PI L + + KYLG+TLD +TF PH
Sbjct: 721 TINPCFTLKTLSP---------VTAPIELEGVILDQPSQAKYLGITLDKRLTFGPH 767
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 126 bits (303), Expect = 4e-29
Identities = 69/223 (30%), Positives = 114/223 (51%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
Q+GFR + + +L +I + + + G + D+ AFD VWH+GL+ +L +G
Sbjct: 573 QYGFRNGLNTILPTLKLRNYIKESIQSKQSV--GLVTLDIEAAFDTVWHDGLLHKLKMIG 630
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPT 375
P L+ I+++FL++R F + ++S+ R L AGVPQG +DIP++
Sbjct: 631 TPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNC 690
Query: 376 HLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXX 555
L+LFADD VY + + S I + +QS L +++KW+I INP K+ A+ F
Sbjct: 691 VLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNKTNAIFFTKRRKPR 750
Query: 556 XXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
+ + PI W ++YLG+ D +TF+ H
Sbjct: 751 YLPDR-------QLRILDSPIQWVDNIRYLGIIFDKKLTFKYH 786
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 126 bits (303), Expect = 4e-29
Identities = 69/223 (30%), Positives = 114/223 (51%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
Q+GFR + + +L +I + + + G + D+ AFD VWH+GL+ +L +G
Sbjct: 521 QYGFRNGLNTILPTLKLRNYIKESIQSKQSV--GLVTLDIEAAFDTVWHDGLLHKLKMIG 578
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPT 375
P L+ I+++FL++R F + ++S+ R L AGVPQG +DIP++
Sbjct: 579 TPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNC 638
Query: 376 HLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXX 555
L+LFADD VY + + S I + +QS L +++KW+I INP K+ A+ F
Sbjct: 639 VLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNKTNAIFFTKRRKPR 698
Query: 556 XXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
+ + PI W ++YLG+ D +TF+ H
Sbjct: 699 YLPDR-------QLRILDSPIQWVDNIRYLGIIFDKKLTFKYH 734
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 126 bits (303), Expect = 4e-29
Identities = 76/230 (33%), Positives = 108/230 (46%), Gaps = 5/230 (2%)
Frame = +1
Query: 10 DEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFN 189
+ QFGFR H V+Q+HR+ E IL + + Y +LF D+ +AFD+VWH GL ++
Sbjct: 546 EHQFGFRAGHCTVEQLHRVVEQILTAYDSKE--YCNSLFLDIREAFDRVWHIGLQLKI-K 602
Query: 190 MGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSP 369
+P +++ +L R F R S+ + AGVPQG +D+P+
Sbjct: 603 QTLPAPYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPD 662
Query: 370 -----PTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLF 534
+ LA FADD V Y SR + A +Q A +W R+W I IN +KS V F
Sbjct: 663 VSLYGKSMLATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNVCF 722
Query: 535 QXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
PP+ + P+P KYLGV LD +TF H
Sbjct: 723 -----------TLKRRTPPPVYIEEVPVPQPNAAKYLGVLLDRRLTFSKH 761
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 123 bits (296), Expect = 3e-28
Identities = 74/228 (32%), Positives = 113/228 (49%)
Frame = +1
Query: 1 ILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFR 180
I+ QFGFR +H ++QV+R+T I + Y A+F DV++AFDKVW +GL+F+
Sbjct: 541 IIPAHQFGFRESHGTIEQVNRITTEIRTAFEYRE--YCTAVFLDVSQAFDKVWLDGLMFK 598
Query: 181 LFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP 360
+ + +P+S +++ +L +R F R S+ + AGVPQG DIP
Sbjct: 599 I-KISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLIYTADIP 657
Query: 361 RSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQX 540
+ ++ FADDT + SR+ +L + + +W WRI +N K V F
Sbjct: 658 TNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIKKWLSDWRIKVNEQKCKHVTFTL 717
Query: 541 XXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
PP+ L P+P A +V YLGV LD +T+R H
Sbjct: 718 NRQD-----------CPPLLLNSIPLPKADEVTYLGVHLDRRLTWRRH 754
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 118 bits (283), Expect = 1e-26
Identities = 73/231 (31%), Positives = 106/231 (45%), Gaps = 8/231 (3%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR H +Q+HR+ L + + Y F D+ +AFD+VWH GL+++ +
Sbjct: 550 QFGFRLQHGTPEQLHRVVNFALEAMENKE--YAVGAFLDIQQAFDRVWHPGLLYKAKRL- 606
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPT 375
P L L+++ FL R+F V+G +SS +P+ AGVPQG +D+P P
Sbjct: 607 FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPV 666
Query: 376 H--------LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVL 531
+A +ADDT V S++ LQ A QW W + IN K V
Sbjct: 667 TEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVT 726
Query: 532 FQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
F P ++L + I + KYLG+TLD +TF H
Sbjct: 727 F-----------ANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRH 766
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p protein.
Length = 718
Score = 118 bits (283), Expect = 1e-26
Identities = 73/231 (31%), Positives = 106/231 (45%), Gaps = 8/231 (3%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR H +Q+HR+ L + + Y F D+ +AFD+VWH GL+++ +
Sbjct: 352 QFGFRLQHGTPEQLHRVVNFALEAMENKE--YAVGAFLDIQQAFDRVWHPGLLYKAKRL- 408
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPT 375
P L L+++ FL R+F V+G +SS +P+ AGVPQG +D+P P
Sbjct: 409 FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPV 468
Query: 376 H--------LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVL 531
+A +ADDT V S++ LQ A QW W + IN K V
Sbjct: 469 TEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVT 528
Query: 532 FQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
F P ++L + I + KYLG+TLD +TF H
Sbjct: 529 F-----------ANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRH 568
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 115 bits (276), Expect = 7e-26
Identities = 72/223 (32%), Positives = 104/223 (46%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR H ++QV+R+T I + Y A+F DVA+AFD+VW +GL+F++ +
Sbjct: 544 QFGFREKHGTIEQVNRITSEIRTAFEHRE--YCTAIFLDVAQAFDRVWLDGLLFKIIKL- 600
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPT 375
+P + +++ +L NR F R + + S + AGVPQG D P
Sbjct: 601 LPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNL 660
Query: 376 HLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXX 555
+ FADDT + S+ L ++ +W WRI IN K V F
Sbjct: 661 TTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTF------- 713
Query: 556 XXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
PP+ L IP A +V YLGV LD +T+R H
Sbjct: 714 ----TLNKQTCPPLVLNNICIPQADEVTYLGVHLDRRLTWRKH 752
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 112 bits (270), Expect = 4e-25
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ +L +
Sbjct: 605 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAKI- 661
Query: 196 VPDSLVLIIRDFLSNRSFRYRVE-GTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP---- 360
+P +L +I+ +L+NR+F + + G S + AGVPQG +D+P
Sbjct: 662 LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYI 721
Query: 361 -RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 528
R PT L+ +ADDT V S + + ++ W KW I +N AK+ V
Sbjct: 722 YRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 781
Query: 529 LFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
+F + + + Q I K YLGVTLD+ +T H
Sbjct: 782 IFTLKNDLPTN--------SMNVKIKGQTIKKESKQSYLGVTLDSKLTLSSH 825
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 112 bits (270), Expect = 4e-25
Identities = 71/223 (31%), Positives = 103/223 (46%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR H ++QV+R+T I + Y A+F DVA+AFD+VW +GL+F++ +
Sbjct: 544 QFGFREKHGTIEQVNRITSEIRTAFEHRE--YCTAIFLDVAQAFDRVWLDGLLFKIIKL- 600
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPT 375
+P + +++ +L N F R + + S + AGVPQG D P
Sbjct: 601 LPQNTHKLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNL 660
Query: 376 HLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXX 555
+ FADDT + S+ L ++ +W WRI IN K V F
Sbjct: 661 TTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTF------- 713
Query: 556 XXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
PP+ L IP A +V YLGV LD +T+R H
Sbjct: 714 ----TLNKQTCPPLVLNNICIPQADEVTYLGVHLDRRLTWRKH 752
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial cds.
).
Length = 964
Score = 109 bits (263), Expect = 3e-24
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ +L +
Sbjct: 477 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAKI- 533
Query: 196 VPDSLVLIIRDFLSNRSFRYRVE-GTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP---- 360
+P +L +I+ +L+NR+F + + G S + AGVPQG +D+P
Sbjct: 534 LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHI 593
Query: 361 -RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 528
PT L+ +ADDT V S + + ++ W KW I +N AK+ V
Sbjct: 594 YHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 653
Query: 529 LFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
++ NL + + Q I K YLGV LD+ +T PH
Sbjct: 654 IY-------TLKNDIPTNL-KTMKIKGQAIKKESKQSYLGVILDSKLTLSPH 697
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 109 bits (263), Expect = 3e-24
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ +L +
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAKI- 649
Query: 196 VPDSLVLIIRDFLSNRSFRYRVE-GTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP---- 360
+P +L +I+ +L+NR+F + + G S + AGVPQG +D+P
Sbjct: 650 LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHI 709
Query: 361 -RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 528
PT L+ +ADDT V S + + ++ W KW I +N AK+ V
Sbjct: 710 YHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 769
Query: 529 LFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
++ NL + + Q I K YLGV LD+ +T PH
Sbjct: 770 IY-------TLKNDIPTNL-KTMKIKGQAIKKESKQSYLGVILDSKLTLSPH 813
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 109 bits (263), Expect = 3e-24
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ +L +
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAKI- 649
Query: 196 VPDSLVLIIRDFLSNRSFRYRVE-GTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP---- 360
+P +L +I+ +L+NR+F + + G S + AGVPQG +D+P
Sbjct: 650 LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHI 709
Query: 361 -RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 528
PT L+ +ADDT V S + + ++ W KW I +N AK+ V
Sbjct: 710 YHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 769
Query: 529 LFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
++ NL + + Q I K YLGV LD+ +T PH
Sbjct: 770 IY-------TLKNDIPTNL-KTMKIKGQAIKKESKQSYLGVILDSKLTLSPH 813
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 109 bits (263), Expect = 3e-24
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ +L +
Sbjct: 555 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAKI- 611
Query: 196 VPDSLVLIIRDFLSNRSFRYRVE-GTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP---- 360
+P +L +I+ +L+NR+F + + G S + AGVPQG +D+P
Sbjct: 612 LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHI 671
Query: 361 -RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 528
PT L+ +ADDT V S + + ++ W KW I +N AK+ V
Sbjct: 672 YHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 731
Query: 529 LFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
++ NL + + Q I K YLGV LD+ +T PH
Sbjct: 732 IY-------TLKNDIPTNL-KTMKIKGQAIKKESKQSYLGVILDSKLTLSPH 775
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 109 bits (263), Expect = 3e-24
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ +L +
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAKI- 649
Query: 196 VPDSLVLIIRDFLSNRSFRYRVE-GTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP---- 360
+P +L +I+ +L+NR+F + + G S + AGVPQG +D+P
Sbjct: 650 LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMPLPHI 709
Query: 361 -RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 528
PT L+ +ADDT V S + + ++ W KW I +N AK+ V
Sbjct: 710 YHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGHV 769
Query: 529 LFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
++ NL + + Q I K YLGV LD+ +T PH
Sbjct: 770 IY-------TLKNDIPTNL-KTMKIKGQAIKKESKQSYLGVILDSKLTLSPH 813
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 109 bits (262), Expect = 3e-24
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 9/232 (3%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ +L +
Sbjct: 593 QFGFRKEHGSEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAKI- 649
Query: 196 VPDSLVLIIRDFLSNRSFRYRVE-GTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP---- 360
+P +L +I+ +L+NR+F + + G S + AGVPQG +D+P
Sbjct: 650 LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYI 709
Query: 361 -RSPPTH---LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 528
R PT L+ +ADDT V S + + ++ + W KW I +N AK+ V
Sbjct: 710 YRPSPTERIMLSTYADDTIVLSSDTLATAATRNNENYLKSFSDWADKWGISVNAAKTGHV 769
Query: 529 LFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
+F + + Q I K YLGV LD+ +T H
Sbjct: 770 IFTLKNDLPTSLR--------TMKIKGQVIKIESKQSYLGVILDSKLTLSSH 813
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 102 bits (244), Expect = 5e-22
Identities = 75/240 (31%), Positives = 112/240 (46%), Gaps = 17/240 (7%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR +H Q+ R+T+ IL + A F D+ +AFD+VWH+GL+++L +
Sbjct: 149 QFGFRKDHGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVWHDGLLYKLSRL- 205
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP---- 360
+P L ++ ++LSNR+F R++G T S + AGVPQG +D+P
Sbjct: 206 IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIV 265
Query: 361 -------RSPPTH-----LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDI 504
P H LA +ADDT + S+ L Q+ +W +KW I I
Sbjct: 266 KDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAI 325
Query: 505 NPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
N K+ +LF TPP+ + Q K +YLG+ LD +TF H
Sbjct: 326 NAKKTGHILFSLKKEQTNI-------YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAH 377
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 102 bits (244), Expect = 5e-22
Identities = 75/240 (31%), Positives = 112/240 (46%), Gaps = 17/240 (7%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR +H Q+ R+T+ IL + A F D+ +AFD+VWH+GL+++L +
Sbjct: 596 QFGFRKDHGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVWHDGLLYKLSRL- 652
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP---- 360
+P L ++ ++LSNR+F R++G T S + AGVPQG +D+P
Sbjct: 653 IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIV 712
Query: 361 -------RSPPTH-----LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDI 504
P H LA +ADDT + S+ L Q+ +W +KW I I
Sbjct: 713 KDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAI 772
Query: 505 NPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
N K+ +LF TPP+ + Q K +YLG+ LD +TF H
Sbjct: 773 NAKKTGHILFSLKKEQTNI-------YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAH 824
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 102 bits (244), Expect = 5e-22
Identities = 75/240 (31%), Positives = 112/240 (46%), Gaps = 17/240 (7%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR +H Q+ R+T+ IL + A F D+ +AFD+VWH+GL+++L +
Sbjct: 596 QFGFRKDHGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVWHDGLLYKLSRL- 652
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP---- 360
+P L ++ ++LSNR+F R++G T S + AGVPQG +D+P
Sbjct: 653 IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIV 712
Query: 361 -------RSPPTH-----LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDI 504
P H LA +ADDT + S+ L Q+ +W +KW I I
Sbjct: 713 KDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAI 772
Query: 505 NPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
N K+ +LF TPP+ + Q K +YLG+ LD +TF H
Sbjct: 773 NAKKTGHILFSLKKEQTNI-------YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAH 824
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 102 bits (244), Expect = 5e-22
Identities = 75/240 (31%), Positives = 112/240 (46%), Gaps = 17/240 (7%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR +H Q+ R+T+ IL + A F D+ +AFD+VWH+GL+++L +
Sbjct: 596 QFGFRKDHGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVWHDGLLYKLSRL- 652
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP---- 360
+P L ++ ++LSNR+F R++G T S + AGVPQG +D+P
Sbjct: 653 IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIV 712
Query: 361 -------RSPPTH-----LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDI 504
P H LA +ADDT + S+ L Q+ +W +KW I I
Sbjct: 713 KDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAI 772
Query: 505 NPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
N K+ +LF TPP+ + Q K +YLG+ LD +TF H
Sbjct: 773 NAKKTGHILFSLKKEQTNI-------YTPPL-INGQRAAKLNKQRYLGLMLDRRLTFCAH 824
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 87.8 bits (208), Expect = 1e-17
Identities = 47/136 (34%), Positives = 71/136 (52%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QF F H ++QV+R+T I + Y ALF DVA+AFD+VW +GL+F++ +
Sbjct: 85 QFDFPAKHGAIEQVNRITTEIRTAFEHRE--YCTALFLDVAQAFDRVWLDGLMFKIIQL- 141
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPT 375
+P ++ +++ +L R F R + SS + AGVPQG DIP +
Sbjct: 142 LPQNIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPILYTLYTADIPTNYQL 201
Query: 376 HLALFADDTTVYYSSR 423
+ FADDT + SR
Sbjct: 202 TIFTFADDTAIISRSR 217
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 68.5 bits (160), Expect = 8e-12
Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 4/232 (1%)
Frame = +1
Query: 1 ILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFR 180
++ Q F++NHS + + R+ L+ + L D +AFD+V + ++ R
Sbjct: 543 LISHNQVAFKSNHSTMDALLRIQHFASNALSTKN--HVSILATDFERAFDRVGIHAVLCR 600
Query: 181 LFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDI- 357
L G+ L +I+ F++NRSFR R+ S+ L G+PQG DI
Sbjct: 601 LERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIAIEDIN 660
Query: 358 ---PRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 528
R +++L+ADD ++ +N + + +K + W A S A
Sbjct: 661 DIVTRHKDIYISLYADDAIIFTKIKNINTVREKFLEILQEINSW---------GATSGAS 711
Query: 529 LFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
L NL+ I + I +K LG+T D + F+ H
Sbjct: 712 LAIEKCQTLHICRKQRCNLS-DIVFNSRTIKDVNFLKILGITFDPKLLFKQH 762
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 51.2 bits (117), Expect = 1e-06
Identities = 32/104 (30%), Positives = 55/104 (52%)
Frame = +1
Query: 1 ILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFR 180
++ D+QFGF+ S + L L+ ++ ++T + D ++AFD+V + +I +
Sbjct: 538 LINDKQFGFKKGKSTSDCL--LYVDYLITKSK---MHTSLVTLDFSRAFDRVGVHSIIQQ 592
Query: 181 LFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQG 312
L ++ I++F+SNR RV SSP PL G+PQG
Sbjct: 593 LQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQG 636
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 48.0 bits (109), Expect = 1e-05
Identities = 55/233 (23%), Positives = 92/233 (39%), Gaps = 9/233 (3%)
Frame = +1
Query: 13 EQFGFRTNHSCVQQVHRLTEHILVGLNRPKPL-----YTGALFFDVAKAFDKVWHNGLIF 177
+Q+GFR S + + +T+ L+ + L Y + DV AF+ ++
Sbjct: 513 QQYGFRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILG 572
Query: 178 RLFNMGVPDSLVLIIRDFLSNRSFRYRVE-GTRSSPRPLTAGVPQGXXXXXXXXXXXXN- 351
+ N+GVPD + +I ++ +R Y E G RS ++AGVPQG +
Sbjct: 573 AMRNLGVPDYIRGVIGNYFRDRVLWYVTEDGPRS--HQVSAGVPQGSVLGPILWNIMYDG 630
Query: 352 --DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTA 525
I + L FADD + ++ + A A +W K + I K+
Sbjct: 631 ILSISKPRGVELHCFADDVAITAVAKTIPELQDISNVAITAAIEWLEKVGLKIAAHKTEV 690
Query: 526 VLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
VL + + I A +KYLGV +D ++F+ H
Sbjct: 691 VLLSSRKSVECMR----------VEVKGVEIASAETLKYLGVLIDRRLSFKAH 733
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 46.8 bits (106), Expect = 3e-05
Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 2/225 (0%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNMG 195
QFGFR CV+ R H+ + Y F D AFD V + + RL ++G
Sbjct: 544 QFGFRQGR-CVEDAWR---HVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLG 599
Query: 196 VPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPR--SP 369
+ + + + F S R R + + P+T G PQG + + + P
Sbjct: 600 CRE--MGLWQSFFSGRRAVIR-SSSGTVEVPVTRGCPQGSISGPFIWDILMDVLLQRLQP 656
Query: 370 PTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXX 549
L+ +ADD + +++++ +K + W + ++ +K+ +L +
Sbjct: 657 YCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEVGDCLSTSKTVIMLLKGALR 716
Query: 550 XXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
P + + +P+ R +YLG+T+ M F H
Sbjct: 717 R-----------APTVRFAGRNLPYVRSCRYLGITVSEGMKFLTH 750
>AY069347-1|AAL39492.1| 396|Drosophila melanogaster LD05576p
protein.
Length = 396
Score = 32.3 bits (70), Expect = 0.64
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -2
Query: 266 PSTRYRKERFDKKSRMMSTRLSGTPMLNSLKIKPLCQTLSNAFATSKKRAPVYNGFGRLS 87
P RY K F + R+ +L+ TPM+ S I + N F+T P+ F
Sbjct: 29 PMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAAKD 88
Query: 86 PT 81
PT
Sbjct: 89 PT 90
>AE014134-3030|AAF53752.1| 396|Drosophila melanogaster CG10495-PA
protein.
Length = 396
Score = 32.3 bits (70), Expect = 0.64
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -2
Query: 266 PSTRYRKERFDKKSRMMSTRLSGTPMLNSLKIKPLCQTLSNAFATSKKRAPVYNGFGRLS 87
P RY K F + R+ +L+ TPM+ S I + N F+T P+ F
Sbjct: 29 PMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAAKD 88
Query: 86 PT 81
PT
Sbjct: 89 PT 90
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,282,049
Number of Sequences: 53049
Number of extensions: 736750
Number of successful extensions: 2288
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2236
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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