Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0200
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 80 1e-15
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 68 5e-12
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 47 1e-05
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 44 1e-04
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 44 1e-04
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 36 0.027
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 31 1.0
Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 30 1.3
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 30 1.3
AF038604-1|AAB92011.4| 436|Caenorhabditis elegans Hypothetical ... 29 2.3
AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical ... 29 3.1
AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical ... 29 3.1
Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical pr... 28 7.1
AC024791-24|AAF60656.1| 627|Caenorhabditis elegans Hypothetical... 28 7.1
AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical ... 27 9.4
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 27 9.4
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 80.2 bits (189), Expect = 1e-15
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Frame = +1
Query: 121 LFFDVAKAFDKVWHNGLIFRLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAG 300
++ D +KAFD++ H+ L+ +L ++ +L++ + +FLSNRSFR R+ T SS + T G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 301 VPQGXXXXXXXXXXXXNDIPRSPPTHLAL--FADDTTVYYSSRNKSLIAKKLQSAALALG 474
VPQG NDI P +A FADDT + Y+S K+ LQSA A+
Sbjct: 77 VPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKL-YASTPKTESENNLQSALDAVV 135
Query: 475 QWFRKWRIDINPAKSTAV 528
W + ++ +N +K+ V
Sbjct: 136 DWTKGSKLTLNQSKTVHV 153
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 68.1 bits (159), Expect = 5e-12
Identities = 58/225 (25%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Frame = +1
Query: 16 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALF-FDVAKAFDKVWHNGLIFRLFN- 189
Q GF+ HS V ++T I+ GLN P + D+ AFDKV L L
Sbjct: 436 QHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLMEA 495
Query: 190 MGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSP 369
G+ + L + ++L R R + S L GVPQG D+P
Sbjct: 496 QGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQ 555
Query: 370 PTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXX 549
T L +ADD ++ + A+K+Q + ++ ++ + I+ KST +F
Sbjct: 556 DTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVFS---- 611
Query: 550 XXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPH 684
P I PIP K LG+TL+ + H
Sbjct: 612 ----CDPKEHKTKPDIYWMDDPIPVINAPKLLGITLNTMTGTKDH 652
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Frame = +1
Query: 139 KAFDKVWHNGLIFRLFNMGVPDSLVLIIRDFLSNRSFRYRVEG-TRSSPRPLTAGVPQGX 315
KAFD+V H+ L+ +L + G+ DFLS+R+F +V + P+++GVP+G
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 316 XXXXXXXXXXXNDIPRSPPTHL--ALFADDTTVYYSS 420
N + S P + + FADD VY S
Sbjct: 62 VSGPFLFLIFINSLLLSVPPSISCSAFADDLKVYSHS 98
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/100 (30%), Positives = 45/100 (45%)
Frame = +1
Query: 13 EQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNM 192
EQ GFR + S + +H L + VG PL +F D KAFD V H + L
Sbjct: 655 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDSVEHQAIWKSLDEQ 712
Query: 193 GVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQG 312
G + + ++++ N + + R P+T GV QG
Sbjct: 713 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQG 751
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/100 (30%), Positives = 45/100 (45%)
Frame = +1
Query: 13 EQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNM 192
EQ GFR + S + +H L + VG PL +F D KAFD V H + L
Sbjct: 394 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDSVEHQAIWKSLDEQ 451
Query: 193 GVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQG 312
G + + ++++ N + + R P+T GV QG
Sbjct: 452 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQG 490
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/100 (30%), Positives = 45/100 (45%)
Frame = +1
Query: 13 EQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFRLFNM 192
EQ GFR + S + +H L + VG PL +F D KAFD V H + L
Sbjct: 484 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDTVEHQAIWKSLDEQ 541
Query: 193 GVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQG 312
G + + ++++ N + + R P+T GV QG
Sbjct: 542 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQG 580
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -2
Query: 356 ISLTNKLNRRGERTEPCGTPAVRGRGEER 270
ISLTN GERT+PCGTP G E+
Sbjct: 50 ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 121 LFFDVAKAFDKVWHNGLIFRLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAG 300
+F D KAFD V H + L G ++ + ++++ N + + R P+T G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTTNF-TPFLRPITVPVTKG 98
Query: 301 VPQG 312
V QG
Sbjct: 99 VRQG 102
>Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical
protein R10E12.1c protein.
Length = 846
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -2
Query: 386 KAKWVGGDRGIS-LTNKLNRRGERTEPCGTPAVRGRGEERVPSTRYRKERFDKKSRMMST 210
K K GG I L ++L +R E T R EE+ RK+ K +RM S
Sbjct: 430 KLKQNGGSSEIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSE 489
Query: 209 RLSGTPMLNSLKIKPLCQTLSNAFATSKKR 120
+L+G + K + + T SNA K++
Sbjct: 490 QLTGPLVTEIGKYRGILHTASNADKMVKEK 519
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -2
Query: 386 KAKWVGGDRGIS-LTNKLNRRGERTEPCGTPAVRGRGEERVPSTRYRKERFDKKSRMMST 210
K K GG I L ++L +R E T R EE+ RK+ K +RM S
Sbjct: 430 KLKQNGGSSEIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSE 489
Query: 209 RLSGTPMLNSLKIKPLCQTLSNAFATSKKR 120
+L+G + K + + T SNA K++
Sbjct: 490 QLTGPLVTEIGKYRGILHTASNADKMVKEK 519
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -2
Query: 386 KAKWVGGDRGIS-LTNKLNRRGERTEPCGTPAVRGRGEERVPSTRYRKERFDKKSRMMST 210
K K GG I L ++L +R E T R EE+ RK+ K +RM S
Sbjct: 430 KLKQNGGSSEIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSE 489
Query: 209 RLSGTPMLNSLKIKPLCQTLSNAFATSKKR 120
+L+G + K + + T SNA K++
Sbjct: 490 QLTGPLVTEIGKYRGILHTASNADKMVKEK 519
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -2
Query: 386 KAKWVGGDRGIS-LTNKLNRRGERTEPCGTPAVRGRGEERVPSTRYRKERFDKKSRMMST 210
K K GG I L ++L +R E T R EE+ RK+ K +RM S
Sbjct: 430 KLKQNGGSSEIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSE 489
Query: 209 RLSGTPMLNSLKIKPLCQTLSNAFATSKKR 120
+L+G + K + + T SNA K++
Sbjct: 490 QLTGPLVTEIGKYRGILHTASNADKMVKEK 519
>AF038604-1|AAB92011.4| 436|Caenorhabditis elegans Hypothetical
protein B0546.2 protein.
Length = 436
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 209 SCSSYGTSCRTALFDIESREPAPPHDLSQLESRKALSSHPSYLAYSSTIFP 361
SCSS +S +A I S+E PP L + S++ S + SS + P
Sbjct: 37 SCSSSASSSSSAAKRIRSQEDGPPSKRWVLSASSTSSTNKSPIPSSSPVLP 87
>AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical
protein F18A12.8b protein.
Length = 816
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 349 NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 513
ND+P+ +L L D+ YY KS++ + + L + F K DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638
>AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical
protein F18A12.8a protein.
Length = 848
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 349 NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 513
ND+P+ +L L D+ YY KS++ + + L + F K DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638
>Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical
protein F28B1.3 protein.
Length = 802
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 190 MGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLT 294
+ +PD ++I R+ R V GT+SSP PLT
Sbjct: 405 LDLPDHYLMIFREEAHPIFMRRFVNGTQSSPIPLT 439
>AC024791-24|AAF60656.1| 627|Caenorhabditis elegans Hypothetical
protein Y47G6A.4 protein.
Length = 627
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 432 PNREEASERSPSPRTVVPKMAHRHQPSEKYCGAISEGKLHTDF-LPD*EEESHTP 593
PN ++ S P+PR + P+ A R PS+ A SE K + F D E+ TP
Sbjct: 540 PNVQQESVVVPAPRRLSPQRAPR--PSQNSPNAYSERKSFSAFPSEDPSEDYETP 592
>AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical
protein H05C05.1b protein.
Length = 219
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 206 VSCSSYGTSCRTALFDIESREPAPPHDLSQLESRKALSSHPSYLAYSS 349
+S +S T I+ P PPH S SR PS Y+S
Sbjct: 1 MSTASDSAETTTTTSSIDHLPPHPPHPTSHHNSRGGRGGRPSMKPYTS 48
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 206 VSCSSYGTSCRTALFDIESREPAPPHDLSQLESRKALSSHPSYLAYSS 349
+S +S T I+ P PPH S SR PS Y+S
Sbjct: 505 MSTASDSAETTTTTSSIDHLPPHPPHPTSHHNSRGGRGGRPSMKPYTS 552
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,486,556
Number of Sequences: 27780
Number of extensions: 357054
Number of successful extensions: 983
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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