Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0200
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ...    30   1.6  
At2g43940.1 68415.m05461 thiol methyltransferase, putative simil...    29   3.8  
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    28   5.0  
At3g06070.1 68416.m00694 expressed protein                             28   6.6  
At1g34420.1 68414.m04275 leucine-rich repeat family protein / pr...    28   6.6  

>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 367

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 213 AHHTGLLVEPLFSISSRGNPLLPTTSHSWSPARLCPLTPP 332
           A H G   +PLF + + G    PT++ +  P+ +  +TPP
Sbjct: 178 AAHLGYRPQPLFPVQNMGMTPTPTSAPAIQPSPVTGVTPP 217


>At2g43940.1 68415.m05461 thiol methyltransferase, putative similar
           to thiol methyltransferase 2 GI:14583121 from [Brassica
           oleracea]
          Length = 226

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 191 WACRIVSCSSYGTSCRTALFDIESREPAPPHDLSQLESRKAL 316
           WA R+      G    T +F I+ R   PP+++S  E  K L
Sbjct: 146 WAQRMEKLLKPGGELITLMFPIDERSGGPPYEVSVSEYEKVL 187


>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 206 VSCSSYGTSCRTA-LFDIESREPAPPHDLSQLESRKALSSHPSYLA 340
           V+C+S GTS     L  I    P PP+ L +LES + LS   + L+
Sbjct: 80  VTCTSDGTSVHALRLPGIGLLGPIPPNTLGKLESLRILSLRSNLLS 125


>At3g06070.1 68416.m00694 expressed protein
          Length = 151

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 468 PRTVVPKMAHRHQPSEKYCGAISEGKLHTDFLPD*EEESHTPDYSL*TTHTLGQE 632
           PR+  P+  H H P +K      +G+    F+P  +   H  D +L T +   QE
Sbjct: 79  PRSSQPRRKHNHHPHQK-----KQGRFIGSFIPKQQFPHHGHDNNLTTLNNNNQE 128


>At1g34420.1 68414.m04275 leucine-rich repeat family protein /
           protein kinase family protein contains leucine rich
           repeat (LRR) domains, Pfam:PF00560; contains protein
           kinase domain, Pfam:PF00069
          Length = 966

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
 Frame = +3

Query: 24  IPYKSLMRSTGAPPHGAHSCGA*STKTVI--HGSSLLRRRKSVRQSLAQWFDFQTIQHGR 197
           I +   + +   P HG H     S   V+   GSS   ++ + R  + Q    + ++   
Sbjct: 678 INFAKAVEAVAHPEHGLHQTMFWSYYRVVMPSGSSYFIKKLNTRDRVFQQASSEQLEVEL 737

Query: 198 AG*SRAHHTGLLVEPLFSISSRGNPLLPTTSHS 296
               + HHT ++V   + + S G  L+   SH+
Sbjct: 738 EMLGKLHHTNVMVPLAYVLYSEGCLLIYDFSHT 770


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,021
Number of Sequences: 28952
Number of extensions: 337892
Number of successful extensions: 943
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)