Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0197
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   3.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   3.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   3.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   6.3  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   8.3  

>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 766 APKSTTAAPPFKPKRITASRQK*AGGGGTYPRGLTRGPTTSKIN 635
           +P S + +PP KP   TAS+   +    T     T    T+  N
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNN 188


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 766 APKSTTAAPPFKPKRITASRQK*AGGGGTYPRGLTRGPTTSKIN 635
           +P S + +PP KP   TAS+   +    T     T    T+  N
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNN 188


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 766 APKSTTAAPPFKPKRITASRQK*AGGGGTYPRGLTRGPTTSKIN 635
           +P S + +PP KP   TAS+   +    T     T    T+  N
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNN 188


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 766 APKSTTAAPPFKPKRITASRQK*AGGGGTYPRGLTRGPTTSKIN 635
           +P S + +PP KP   TAS+   +    T     T    T+  N
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNN 188


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 766 APKSTTAAPPFKPKRITASRQK*AGGGGTYPRGLTRGPTTSKIN 635
           +P S + +PP KP   TAS+   +    T     T    T+  N
Sbjct: 101 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNN 144


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 766 APKSTTAAPPFKPKRITASRQK*AGGGGTYPRGLTRGPTTSKIN 635
           +P S + +PP KP   TAS+   +    T     T    T+  N
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNN 188


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 766 APKSTTAAPPFKPKRITASRQK*AGGGGTYPRGLTRGPTTSKIN 635
           +P S + +PP KP   TAS+   +    T     T    T+  N
Sbjct: 145 SPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNN 188


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -3

Query: 311 C*PPTCPGTGACIQSQTGHICIPRCRP 231
           C P  C   G C+    G  C  +C P
Sbjct: 264 CRPGACHNNGTCLDKVGGFEC--KCPP 288


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/43 (20%), Positives = 17/43 (39%)
 Frame = +2

Query: 74  TVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAE 202
           T+S  CK        +  H+ V F +++   ++    G    E
Sbjct: 31  TISQGCKACGYHSPLESNHKLVTFILKNPPNLNPAVQGSSLTE 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,762
Number of Sequences: 336
Number of extensions: 3633
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)