Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0197
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        64   1e-10
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   6e-09
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             55   6e-08
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            47   2e-05
SB_36002| Best HMM Match : Peptidase_A17 (HMM E-Value=9.3e-41)         32   0.45 
SB_20964| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_11461| Best HMM Match : NHL (HMM E-Value=0)                         30   2.4  
SB_12736| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-11)         29   3.2  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               29   4.2  
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)                29   5.5  
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)                      28   9.6  

>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
 Frame = +2

Query: 59  MASGVTVSDACKTTYEEIKKDKKH-RYVVFYIRDEKQIDVETVGERNAE--YEQFLEDLQ 229
           M +G+ +       + EIKK     RY++F + ++K+  V    +   E  +E  L+DL 
Sbjct: 247 MEAGLNIKGEVTDGWNEIKKAASGLRYIIFKMDEKKENVVFEKKKMKCECSHEDVLDDLP 306

Query: 230 KGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 409
                E RY   + +Y +      E + + KL L+ WCPD  ++K +M+ +++F  +KK 
Sbjct: 307 ---ADEPRYIALNLDYKNV-----EGADRSKLVLIFWCPDNCEIKSRMVSAATFQDVKKK 358

Query: 410 LVGVQKYIQATDLSEASQEAVEEKLR 487
             G  K ++  + SE S EA++E+L+
Sbjct: 359 CPGGAKCLEIQERSELSFEALKEELK 384


>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
 Frame = +2

Query: 65  SGVTVSDACKTTYEEIKKDKKH-RYVVFYIRDEKQIDVETVGERNAE--YEQFLEDLQKG 235
           +G+ +       + EIK      RY +F + ++K+  V    +   E  ++  L+DL   
Sbjct: 2   AGLNIKSDVTDGWNEIKMVASGLRYTIFKMDEKKENVVMEKKKMITECCHDDVLDDLP-- 59

Query: 236 GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLV 415
            T E RY   + +Y ++     E +++ KL L+ WCPD   +K KM+ +++F  + K   
Sbjct: 60  -TDEPRYVALNLDYKNE-----EGAERSKLVLIFWCPDNCGIKNKMVSAATFKEVMKKCP 113

Query: 416 GVQKYIQATDLSEASQEAVEEKLR 487
           G  K ++  D  + S EA++EKL+
Sbjct: 114 GGAKCLEIQDRFDLSFEALKEKLK 137


>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
 Frame = +2

Query: 65  SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 211
           SG+ + D     Y+ ++ K+K H++  F I D+          K++D  T  E  A ++Q
Sbjct: 4   SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63

Query: 212 FLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSF 391
            LE L      E RY L+D  +  +     +      L  + WC D A +KK+M+ +++ 
Sbjct: 64  MLEKLSDS---EPRYILYDLNFPRK-----DGRAFHHLVYIFWCSDNAPIKKRMVSAATN 115

Query: 392 DALKKSLVGVQKYIQATDLSEASQEAVEEK 481
           + LK   V V+K  Q  D ++ + + + +K
Sbjct: 116 ELLKTKFV-VKKVFQINDRADLNYDDIADK 144


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
 Frame = +2

Query: 65  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV-----ETVGERNAEYEQ--FLED 223
           SG+ V D      + +K  K H+Y +F I DE  + V     ++V     E ++  F + 
Sbjct: 4   SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVVIDQTFKSVVTNTREEDRAIFYQM 63

Query: 224 LQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALK 403
           ++K    E RY L+D ++  +     E      L  +SWC D A ++KKM  +S+ D ++
Sbjct: 64  VEKLSDREPRYILYDMKFPRK----EEKRIFNNLVFISWCSDKAPIEKKMKLASTQDYVR 119

Query: 404 KSLVGVQKYIQATDLSEASQEAVEEKLRAT 493
           K        + A D  +   + +  K   T
Sbjct: 120 KKFSEATTSVNANDFDDLDYDEIAAKAEKT 149


>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +2

Query: 281 HQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 454
           H+ Q    A      FL   C D A +KKKML  S+++ LKK   G++KY +A+++ E
Sbjct: 241 HKTQDHRSALSDLVFFLFDRCSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298


>SB_36002| Best HMM Match : Peptidase_A17 (HMM E-Value=9.3e-41)
          Length = 193

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 170 DVETVGERNAEYEQFLEDLQKGGT---GECRYGLFDFEYTHQCQGTSEASKK 316
           D E  GER   +  +L+DL++        C YG+   E T+   G  +ASKK
Sbjct: 83  DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGVSGAEVTYSLHGFGDASKK 134


>SB_20964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 170 DVETVGERNAEYEQFLEDLQKGGT---GECRYGLFDFEYTHQCQGTSEASKK 316
           D E  GER   +  +L+DL++        C YG+   E T+   G  +ASKK
Sbjct: 139 DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGVSGAEVTYSLHGFGDASKK 190


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 170 DVETVGERNAEYEQFLEDLQKGGT---GECRYGLFDFEYTHQCQGTSEASKK 316
           D E  GER   +  +L+DL++        C YG  + E T+   G  +ASKK
Sbjct: 422 DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGGSEAEVTYSLHGFGDASKK 473


>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 342 HHDIRKSFCFLLASDVPWHWCVYSKSNRPYLHSPVP-PFCRS 220
           H  + + +C+   S V   +C +S  +RPY HSPV  P+C S
Sbjct: 130 HSPVDRPYCY---SPVDHPYC-HSPVDRPYCHSPVDRPYCHS 167



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 339 HDIRKSFCFLLASDVPWHWCVYSKSNRPYLHSPVP-PFCRS--SRNCSYSALRSP 184
           H   + +C    S V   +C YS  +RPY HSPV  P+C S   R   YS +  P
Sbjct: 95  HSWSRPYCH---SPVDRPYC-YSPVDRPYCHSPVDRPYCHSPVDRPYCYSPVDHP 145


>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
          Length = 819

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 515 THELA--TKPNPLSDTPALTTRGHDTTSRLVLLQRKTNSINMIDF 643
           T EL+  T+ NPL  TPAL++RG   T R+   + + N+   IDF
Sbjct: 296 TQELSDTTRLNPL--TPALSSRGQRGTPRIPYRESQQNAEGNIDF 338


>SB_12736| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-11)
          Length = 597

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +2

Query: 158 EKQIDVETVGERNAEYEQFLEDLQKGGT---GECRYGLFDFEYTHQCQGTSEASKK 316
           E ++     GER   +  +L+DL++        C YG+   E T+   G  +ASKK
Sbjct: 222 EVRLGRRLTGERKKRWLSWLDDLKRVKEVRIARCVYGVSGAEVTYSLHGFGDASKK 277


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 759 KVQRLPRPSNRNALLLHGRNRQGA 688
           +VQR P P+ RN++ LHG   Q A
Sbjct: 29  QVQRRPEPTPRNSIFLHGLRAQTA 52


>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
          Length = 341

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/84 (19%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +2

Query: 170 DVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPD 349
           +VET  E++ + E+ +++ ++ G  E +  L  FE TH+   T     ++         +
Sbjct: 151 EVETTTEQDKQPEEVVKNSEEEGNHEDQEPLLSFEDTHEDPETKPVEGEEPALYQKVTEE 210

Query: 350 -TAKVKKKMLYSSSFDALKKSLVG 418
            +A+++++       +A++++++G
Sbjct: 211 PSAEIEQEKKDDEEDNAMEEAILG 234


>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1690

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 392 DALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTHELATK 535
           D LKK +  +QK     +L +AS E  EEK +  +   + F H++A K
Sbjct: 403 DGLKKRMEQIQK-----ELQQASSELEEEKKKTENLLSSIFPHDVANK 445


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
 Frame = +2

Query: 515 THELATKPNPLSDTPALTTRGHDTTSRLVLLQRKT-NSINMIDFTGGRTSCESPRVGTTA 691
           THE       L DT    T  HDTT     L   T N  +  D TG  T         T 
Sbjct: 515 THETTRHDTHLHDTTENDTHPHDTTGNDTYLHDTTENDTHPHDTTGNDTQLHDTTGNKTR 574

Query: 692 P 694
           P
Sbjct: 575 P 575


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = +1

Query: 433 PSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRPRH 585
           P DRP        +   P  RS   S Y   RD    A +  C D  R RH
Sbjct: 458 PRDRPRARAHDTDQPSDPCQRSADQSPYPTQRDSQPGAGKRPCSDAGRHRH 508


>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
          Length = 409

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 461 QEAVEEKLRATDRQ*TAFTHEL--ATKPNPLSDTPALTTRGH 580
           +E    K+ AT+    AFTH+L    KP  +SD P +  +G+
Sbjct: 22  EETPPIKIEATNHHAKAFTHDLENLAKPLKVSDVPNVFLQGY 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,379,742
Number of Sequences: 59808
Number of extensions: 491262
Number of successful extensions: 1685
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)