Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0196
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 266 3e-72
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 81 2e-16
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 79 7e-16
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 76 5e-15
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 69 8e-13
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 61 2e-10
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 53 4e-08
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 49 6e-07
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.3
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 28 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 2.3
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 4.0
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa... 27 4.0
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 6.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.9
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 9.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.2
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.2
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 266 bits (651), Expect = 3e-72
Identities = 122/176 (69%), Positives = 150/176 (85%)
Frame = +3
Query: 9 KEVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNV 188
K +ENANILIANT MDTDK+KVFG+ ++VD+ K+AELE AE+EKMK KV KI +H N
Sbjct: 226 KVMENANILIANTAMDTDKVKVFGARVRVDTTGKLAELERAEREKMKAKVEKIKSHNINC 285
Query: 189 FINRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLI 368
FINRQLIYN+PEQLFADAG+M+IEHADF+GIERL LVTGGEI STFD P+ VKLGHCK I
Sbjct: 286 FINRQLIYNWPEQLFADAGIMSIEHADFDGIERLSLVTGGEIASTFDHPELVKLGHCKKI 345
Query: 369 EEVLIGDESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKEPK 536
EE++IG++ +I+FSGV G ACTIV+RGAT Q++DE+ER++HDAL VL+ TV E +
Sbjct: 346 EEIIIGEDKMIKFSGVEAGEACTIVLRGATHQLLDESERAIHDALAVLSQTVAESR 401
Score = 30.3 bits (65), Expect = 0.32
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 677 NAGYDSADLIARLKAHHSRG 736
NAG+DS++L+A+LKA H G
Sbjct: 449 NAGFDSSELVAQLKAAHYDG 468
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 81.0 bits (191), Expect = 2e-16
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
Frame = +3
Query: 15 VENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFI 194
+ENA I I P + K K + + S+++ L+ EKEK ++ + + N+ I
Sbjct: 245 IENAKIAILTCPFEPPKPKT-KHKLDITSVSEFEALQAYEKEKFQEMIKHVKDAGANLVI 303
Query: 195 NRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEE 374
+ + L + A+ IE + + T G IV F+ KLG ++ E
Sbjct: 304 CQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATNGRIVPRFEDLSSDKLGSAGIVRE 363
Query: 375 VLIGD--ESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKE 530
V G + ++ A A T+ +RG+ + ++DEA+R+LHDALCV+ +++
Sbjct: 364 VSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRD 417
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 79.0 bits (186), Expect = 7e-16
Identities = 48/173 (27%), Positives = 81/173 (46%)
Frame = +3
Query: 9 KEVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNV 188
K +N IL + ++ K + + ++VD + + + AE + K+ I+A V
Sbjct: 235 KFFKNPKILCLDVELEL-KAEKDNAEVRVDKVQEYQNIVDAEWRIIFSKLEAIVATGAKV 293
Query: 189 FINRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLI 368
+++ I + Q FAD + + + R+ GG I ST + ++ LG C
Sbjct: 294 VLSKLPIGDLATQYFADRDIFCAGRVAADDLNRVVQAVGGSIQSTCSNIEEKHLGTCDTF 353
Query: 369 EEVLIGDESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAATVK 527
EE IG + F G CT+++RG Q I E ERSLHDA+ ++ +K
Sbjct: 354 EERQIGGDRFNLFEGCPKAKTCTLILRGGADQFIAEVERSLHDAIMIVKHALK 406
Score = 29.5 bits (63), Expect = 0.56
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 677 NAGYDSADLIARLKAHHSRGETLW 748
NAG+DS +++ +L+ H++GE +W
Sbjct: 457 NAGFDSTNILNKLRMQHAKGE-MW 479
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 76.2 bits (179), Expect = 5e-15
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 6/178 (3%)
Frame = +3
Query: 15 VENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVF- 191
+E ANI + + K + + V+ ++ ++ E++ + + KI NV
Sbjct: 230 IEKANIALIQFQLSPPKPDMENQVV-VNDYRQMDKILKEERQYLLNMCKKIKKAGANVIL 288
Query: 192 ----INRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHC 359
I R + + A +M I+ + + +E + TG + ++ +S + KLGH
Sbjct: 289 IQKSILRDAVNDLALHFLAKLKIMVIKDIERDEVEFICKSTGCKPIADIESFAEDKLGHA 348
Query: 360 KLIEEVLIGDESLIRFSGVA-LGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKE 530
L+EE E +++FSGV G +I+ RGA ++EAERSLHDALCV+ VK+
Sbjct: 349 DLVEETSSSGEKIVKFSGVKNAGKTVSILCRGANLLTLEEAERSLHDALCVIRCLVKQ 406
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 68.9 bits (161), Expect = 8e-13
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 7/190 (3%)
Frame = +3
Query: 15 VENANILIANTPMDTDKIKV-FGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVF 191
V+NA I + + MD K K+ G + +D ++ ++ E ++V KIL NV
Sbjct: 234 VQNAKIAVLD--MDLQKTKMALGVHVTIDDPDQLEKIREREVMITLERVKKILNAGANVI 291
Query: 192 INRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVK------LG 353
+ + I + + +AG MA+ E + R+ +G ++S+ + + + LG
Sbjct: 292 LTTKGIDDLCLKSIIEAGAMAVRRCKKEDLRRIAKASGATLLSSLSNLEGEETFESSYLG 351
Query: 354 HCKLIEEVLIGDESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKEP 533
+ + + D+ I G S+ +IV+RG + +DE ERS+HD+L V+ T++
Sbjct: 352 SAEEVVQEKFSDDECILVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVKRTLESG 411
Query: 534 KSYVEEGLVK 563
K G V+
Sbjct: 412 KVVPGGGAVE 421
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 61.3 bits (142), Expect = 2e-10
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 1/177 (0%)
Frame = +3
Query: 9 KEVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNV 188
+ +EN I++ + P++ K + + I++ + E+E++K + I+A K ++
Sbjct: 229 RRIENPRIVLLDCPLEYRKGES-QTNIEISKDTDWNRILEIEEEQVKRMCDYIIAVKPDL 287
Query: 189 FINRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGH-CKL 365
I + + + + A + A+ R+ G IV+ + + +G C L
Sbjct: 288 VITEKGVSDLAQHYLLKANITALRRTRKSDNNRIARACGANIVNRLEDLREKDVGTGCGL 347
Query: 366 IEEVLIGDESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKEPK 536
+GDE +G ACTI++RG ++ +I+E ER+L DA+ V PK
Sbjct: 348 FYIDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPK 404
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 53.2 bits (122), Expect = 4e-08
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 10/184 (5%)
Frame = +3
Query: 9 KEVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHK--- 179
K+V+NA ILI N ++ +K ++ S + + L +E++ + +K+ KI+ K
Sbjct: 221 KQVKNAYILILNVSLEYEKSEI-NSGFFYSTSEQRERLVESERKFVDNKLRKIVELKKEV 279
Query: 180 CN-------VFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPD 338
C V IN++ I + A G+MA+ A +ERL L GG ++ D +
Sbjct: 280 CERDPTANFVIINQKGIDPLSLDVLAKNGIMALRRAKRRNMERLQLACGGVAQNSVDDLN 339
Query: 339 KVKLGHCKLIEEVLIGDESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAA 518
LG + E +G+E V + TI+I G I + + + D L +
Sbjct: 340 PEVLGWAGSVYERTLGEEKYTFVEDVKDPKSATILIHGPNTYTIQQIQDATRDGLRAVKN 399
Query: 519 TVKE 530
V++
Sbjct: 400 AVED 403
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 530 FFYSSSKHAKRIME*TLSFVDNLL 459
FFYS+S+ +R++E FVDN L
Sbjct: 246 FFYSTSEQRERLVESERKFVDNKL 269
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 49.2 bits (112), Expect = 6e-07
Identities = 34/172 (19%), Positives = 78/172 (45%), Gaps = 1/172 (0%)
Frame = +3
Query: 18 ENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFIN 197
+ A + + + P+D + + G T+ + + ++ + E+ ++ + +I V +
Sbjct: 235 KEAKVAVFSCPLDISQTETKG-TVLLHNAQEMLDFSKGEENLIESHIKEIYDAGVRVVVT 293
Query: 198 RQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEV 377
+ + ++ I + RL V G ++ P ++G ++E +
Sbjct: 294 SGNVNDLVLHYLNRFEILVIRVPSKFELRRLCRVVGATPLARMGVPMPEEMGSVDVVETI 353
Query: 378 LIGDESLIRFSGVA-LGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKE 530
IG + + F V + TIV+RGAT+ +D+ ER++ D + ++ A VK+
Sbjct: 354 EIGGDRVTVFRQVEDITRTATIVLRGATKTYLDDLERAIDDGVNIVKALVKD 405
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.3 bits (60), Expect = 1.3
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -1
Query: 451 PRITIVQAEPNATPEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDT---ISPPVTKPSLS 281
P+IT + E ++ R+ S+ + SS S T S ES D S PVT +S
Sbjct: 540 PKITTIDGESPSSISSRLPSSNLEQGSS-----SSVTKSPESMPDPSAKASSPVTSKGVS 594
Query: 280 IPSKSACSIAITPAS 236
I KSA + TP S
Sbjct: 595 INEKSAVNNYATPLS 609
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 63 KIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFIN 197
K+KV+G + ++I+ L + KEK KD ++ HK N +N
Sbjct: 638 KLKVYGRV----AYSRISNLHKSSKEKGKDSQVRVALHKENTALN 678
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.3
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -1
Query: 454 APRITIVQAEPNATPEKRIKLSSPIRTSSINLQ*PSFTL-SGESNVDTIS--PPVTKPSL 284
AP + I + P S+P + + + PS SG V S PPV KPS+
Sbjct: 1040 APPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSV 1099
Query: 283 SIPSKSACSIAITPASA 233
+ P S+A+ P A
Sbjct: 1100 AAPPVPKPSVAVPPVPA 1116
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = -1
Query: 412 PEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSLSIPSKSA 263
P + + +S+P+ +I+ ++ +S + + PP + S+ IP K+A
Sbjct: 100 PAEALTISTPVDPINIDELDRAYAVSPSDTSNLLHPPTSSSSIPIPIKNA 149
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 397 KLSSPIRTSSINLQ*PSFTLSGESNV-DTISPPVTKPSLSIPSKSACS 257
K S + +S ++ TLS S V T S PVT S S+ KSA S
Sbjct: 194 KASKKLTSSPTSVASKKATLSSVSKVASTSSLPVTSVSASVDPKSAAS 241
>SPBC25H2.07 |tif11||translation initiation factor
eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +3
Query: 135 KEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADAGVMA----IEHADFEGIERLGLVT 302
K K K N+ N R+L Y Q++A M IE A F+G++RLG +
Sbjct: 3 KNKGKGGKNRRRGKNENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIR 62
Query: 303 G 305
G
Sbjct: 63 G 63
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 63 KIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKIL-AHK 179
K+K G T++ D A VA K+ K K K+L AHK
Sbjct: 237 KLKELGITLESDVSHPKAASPVASKKSSKKKNKKVLAAHK 276
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.9
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Frame = -1
Query: 442 TIVQAEPNATPEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSLSIPSKSA 263
T+V + T + S+PI +SS+ T S N T T + S P S+
Sbjct: 3376 TVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSS 3435
Query: 262 ----CSIAITPASANNCSG*LYISCLLMKTLHLCAKXXXXXXXXXXXXXXSNSAILAIES 95
S IT +S N S + S +L + + + S+++ S
Sbjct: 3436 TVVNSSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLNSSTPISSSTVITSSVVIGSS 3495
Query: 94 TLIVEPNTLILSVSI 50
+++ ++++ SVS+
Sbjct: 3496 SVLSYASSIVSSVSL 3510
Score = 25.4 bits (53), Expect = 9.2
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Frame = -1
Query: 442 TIVQAEPNATPEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDT--ISPPVTKPSLSIPSK 269
T+V + T + S+PI +SS+ + T S N T S V S +I S
Sbjct: 3292 TVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSS 3351
Query: 268 SA--CSIAITPASANNCSG*LYISCLLMKTLHLCAKXXXXXXXXXXXXXXSNSAILAIES 95
S S +T +S N S + S ++ + + + NS+ I S
Sbjct: 3352 SILNSSTPVTSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS-TPITS 3410
Query: 94 TLIVEPNTLILS 59
+ +V +T I S
Sbjct: 3411 STVVNSSTPITS 3422
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 378 LIGDESLIRFSGVALGSACTIV 443
LIGDESLI++S A C V
Sbjct: 261 LIGDESLIKYSAAAHTRICFAV 282
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.2
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -1
Query: 433 QAEPNATPEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSL---SIPSKSA 263
Q ++T ++P TSS L S S S + S +T SL SIPS S+
Sbjct: 186 QPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSS 245
Query: 262 CSIAITPASANNCS 221
S + + + +++ S
Sbjct: 246 SSSSTSSSLSSSSS 259
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 409 EKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSLSIPSKSACSI 254
+K IK + TSS N Q S+T G N + T PS+ IP+ A ++
Sbjct: 604 DKTIKTNQATSTSSSNTQEISYT--GTLNDNINEGLSTFPSIDIPASEADNV 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,770
Number of Sequences: 5004
Number of extensions: 53067
Number of successful extensions: 196
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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