Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0194
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 149 5e-37
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 71 1e-13
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 41 2e-04
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 40 2e-04
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 39 5e-04
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 38 0.001
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 38 0.002
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 37 0.003
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 37 0.003
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 36 0.005
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 36 0.005
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 36 0.007
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 36 0.007
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 35 0.009
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 35 0.012
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 35 0.012
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 35 0.012
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 34 0.020
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 33 0.047
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 32 0.083
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 32 0.083
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 32 0.083
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 31 0.11
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.19
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 30 0.25
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.25
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 30 0.33
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 30 0.33
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 29 0.44
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 29 0.44
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 29 0.44
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 29 0.44
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 29 0.77
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.0
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 1.3
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 27 1.8
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 2.3
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 27 3.1
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 27 3.1
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 4.1
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 4.1
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 5.4
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 26 5.4
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 5.4
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 7.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.2
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 9.5
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 9.5
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 149 bits (360), Expect = 5e-37
Identities = 85/177 (48%), Positives = 102/177 (57%), Gaps = 2/177 (1%)
Frame = +3
Query: 114 ISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAG--DSCRYDKK*ENGRASFTLGRAS 287
I+ HSHIKGLGL E+G + G +GQE AREA G KK F G +
Sbjct: 16 ITTHSHIKGLGLKEDGTCESVGGGFIGQEKAREACGIITDLIKSKKFGGKGVLFAGGAGT 75
Query: 288 WYWQNCYSSCHRSGTWN*GSFLSNGW**SLQHSRSRKQRY*WENFRRAIGLRIPETKEVY 467
+ G + + S +K ENFRRAIGLR+ ETKEVY
Sbjct: 76 GKTALALAIAQELGPKVPFCPMVGS---EVYSSEIKKTEALMENFRRAIGLRVKETKEVY 132
Query: 468 EGEVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQLKLDPPIYESFQRKRLKLG 638
EGEVTE+ P E ENP GGYGKT+SHV++GLKT KGTKQLKLDP IYES QR+++ G
Sbjct: 133 EGEVTEMVPEEAENPLGGYGKTISHVLLGLKTHKGTKQLKLDPSIYESLQREQVSTG 189
Score = 89.0 bits (211), Expect = 5e-19
Identities = 40/55 (72%), Positives = 47/55 (85%)
Frame = +1
Query: 220 GIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYST 384
GI+ D+I+SKK G+ +L AG GTGKTA+ALAIAQELG KVPFCPMVGSEVYS+
Sbjct: 51 GIITDLIKSKKFGGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSS 105
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 71.3 bits (167), Expect = 1e-13
Identities = 31/57 (54%), Positives = 43/57 (75%)
Frame = +1
Query: 211 RLQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 381
R G+++ MI+ ++AGRA+L+AGPP TGKTAIA+ +AQ LG+ PF + SEVYS
Sbjct: 49 RAAGVILKMIQEGRIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYS 105
Score = 53.6 bits (123), Expect = 2e-08
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Frame = +3
Query: 114 ISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGDSCRYDKK*E-NGRASFTLGRASW 290
I AHSHIKG+GL++N P + + G+VGQ AR AAG + ++ GRA G S
Sbjct: 17 IGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAAGVILKMIQEGRIAGRAILMAGPPST 76
Query: 291 YWQNCYSSCHRS-GTWN*GSFLSNGW**SLQHSRSRKQRY*WENFRRAIGLRIPETKEVY 467
+S G+ LS SL+ S++ + R++IG+RI E E+
Sbjct: 77 GKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEAL---LQALRKSIGVRIKEETEII 133
Query: 468 EGEVTEL 488
EGEV E+
Sbjct: 134 EGEVVEV 140
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
R +LL GPPGTGKT +A A+A E VPF M GS+
Sbjct: 301 RGVLLTGPPGTGKTMLARAVAGE--ANVPFFFMSGSQ 335
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 40.3 bits (90), Expect = 2e-04
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +1
Query: 175 WQPVSWVKSLHVRLQGIVVDMIRSKKM-------AGRALLLAGPPGTGKTAIALAIAQEL 333
W + +KS+ V LQ +V I+ ++ A +LL GPPG GKT +A A+A E
Sbjct: 491 WNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANE- 549
Query: 334 GTKVPFCPMVGSEV 375
+K F + G E+
Sbjct: 550 -SKANFISIRGPEL 562
Score = 39.5 bits (88), Expect = 4e-04
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFD 426
R +LL GPPG GKT +A A+A ELG VPF + + S E+ +F+
Sbjct: 209 RGVLLHGPPGCGKTMLANALANELG--VPFISISAPSIVSGMSGESEKKVREVFE 261
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
R +L+GPPGTGKT +A A A E VPF + GSE
Sbjct: 330 RGAILSGPPGTGKTLLAKATAGE--ANVPFLSVSGSE 364
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 232 DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQE 330
D+ + + R +LL GPPGTGKT +A A+A E
Sbjct: 483 DLFQGLREPARGMLLFGPPGTGKTMLARAVATE 515
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ +LL GPPGTGKT +A A+A LG V F +V S +
Sbjct: 167 KGVLLYGPPGTGKTLLARAVAASLG--VNFLKVVSSAI 202
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
R +LL GPPGTGKT + A+A T F +VGSE
Sbjct: 169 RGVLLYGPPGTGKTMLVKAVAN--STAANFIRVVGSE 203
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
R +L+ GPPGTGKT +A A+A E G
Sbjct: 259 RGILMYGPPGTGKTLMARAVANETG 283
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/55 (40%), Positives = 28/55 (50%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFD 426
+ +L GPPGTGKT +A AIA E F + G E+ S E+ IFD
Sbjct: 532 KGVLFFGPPGTGKTLLAKAIANECSAN--FISVKGPELLSMWFGESESNVRDIFD 584
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ ++L GPPGTGKT A A+A T F ++GSE+
Sbjct: 214 KGIMLYGPPGTGKTLCARAVANR--TDATFIRVIGSEL 249
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 253 MAGRALLLAGPPGTGKTAIALAIAQELGTKV 345
M R +LL GPPGTGKT + A+A E +V
Sbjct: 311 MPPRGVLLYGPPGTGKTMVMRAVAAEANAQV 341
Score = 31.5 bits (68), Expect = 0.11
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVY 378
+ +LL GPPG KT A AIA E G + F + G E++
Sbjct: 583 KGVLLYGPPGCSKTITAKAIATETG--LNFIAVKGPELF 619
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ +LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 180 KGILLYGPPGTGKTLLARAVAHH--TDCKFIRVSGSEL 215
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFD 426
+LL GPPGTGKT +A A+A EL + F + G E+ + E+ +F+
Sbjct: 691 VLLYGPPGTGKTLLAKAVATEL--SLEFVSIKGPELLNMYVGESEANVRNVFE 741
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 35.1 bits (77), Expect = 0.009
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ ++L G PGTGKT +A A+A + T F +VGSE+
Sbjct: 226 KGVILYGAPGTGKTLLAKAVANQ--TSATFLRVVGSEL 261
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFDV 429
+LL GPPGTGK+ +A A+A E G+ F + S++ S E+ + ++F++
Sbjct: 165 ILLYGPPGTGKSYLAKAVATEAGS--TFFSISSSDLVSKWMGESERLVRQLFEM 216
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +1
Query: 265 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
++LL+GP +GKTA+A IA LG++ PF +V +E
Sbjct: 587 SVLLSGPIASGKTALAATIA--LGSEFPFVKLVSAE 620
Score = 34.3 bits (75), Expect = 0.015
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVP 348
+ +LL GPPGTGKT IA I + L + P
Sbjct: 305 KGILLYGPPGTGKTLIARQIGKMLNAREP 333
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 34.7 bits (76), Expect = 0.012
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFDV 429
+ +LL GPPGTGKT +A A+A E K F + S + S ++ + +F+V
Sbjct: 413 QGMLLFGPPGTGKTMLARAVATE--AKATFFSISASSLTSKYLGDSEKLVRALFEV 466
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 214 LQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 333
L+ + V +R M G+ + L GPPG GKT++ +IA L
Sbjct: 557 LELVAVGKLRGT-MQGKIMCLVGPPGVGKTSVGKSIASAL 595
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 32.7 bits (71), Expect = 0.047
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTK 342
R +L GPPGTGKT +A +A TK
Sbjct: 407 RGVLFHGPPGTGKTLMARVLAANCSTK 433
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 31.9 bits (69), Expect = 0.083
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPG+GKT+ A+A EL
Sbjct: 243 RGYLLYGPPGSGKTSFLYALAGEL 266
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 31.9 bits (69), Expect = 0.083
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 274 LAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQE 396
+ GP G+GKTA+ L + + LG K +V +++++ DQE
Sbjct: 91 VGGPVGSGKTALLLQLCRLLGEKYSI-GVVTNDIFTREDQE 130
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 31.9 bits (69), Expect = 0.083
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE 330
+ LLL GPPG GKT +A A+A++
Sbjct: 126 KGLLLYGPPGCGKTMLAKALAKQ 148
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGT---KVPFCPMVGSEVYS 381
R +L GPPGTGKT +A A+A + KV F G++ S
Sbjct: 301 RGVLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLS 343
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
+ +LL G PG GKT++ A+A+E G
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETG 1584
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKV 345
R +LLAGP G GK + IA +LG ++
Sbjct: 153 RPILLAGPEGIGKKFLITQIAAKLGQQI 180
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 226 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 345
+++ + + LLL G GTGKT +A LG KV
Sbjct: 456 LLEQLAAGVQTNEPLLLVGETGTGKTTTIQLLAGLLGQKV 495
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKV 345
+A+LL+GPPG GKT A +A+ G V
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVAKLEGYDV 437
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQEL 333
+L GPPGTGKT+ LA A+++
Sbjct: 59 MLFYGPPGTGKTSTILACARKI 80
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 253 MAGRALLLAGPPGTGKTAIALAIAQELG 336
MAG L+L GPPG GK A I ++ G
Sbjct: 1 MAGMRLILVGPPGAGKGTQAPNIQKKYG 28
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 29.9 bits (64), Expect = 0.33
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKVPFCP-MVGSEVYSTADQENRGIN 411
+L G PGTGKT+ LA+++EL F P ++ S V + RGI+
Sbjct: 55 MLFYGSPGTGKTSTILALSREL-----FGPQLMKSRVLELNASDERGIS 98
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 193 VKSLHVRLQGIVVDMIRSKKMAGRALLL--AGPPGTGKTAIALAIAQELGTK 342
+ SL + + I+ + + K GR +L +GP G+GK+ +A A+ EL K
Sbjct: 1 MSSLEIIVDKILKFLEKQPKPEGRPFILGISGPQGSGKSTLASALDTELTRK 52
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQELGT 339
L+ GPPGTGKT + ++ L T
Sbjct: 411 LIQGPPGTGKTVTSASVVYHLAT 433
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 253 MAGRALLLAGPPGTGKTAIALAIAQELG 336
+ R LL+ GP G GK+ +A+ELG
Sbjct: 103 LESRLLLICGPSGCGKSTAVQVLAKELG 130
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE 330
+ L+ GPPGTGKT +A A A +
Sbjct: 220 KGCLMFGPPGTGKTLLARACAAQ 242
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
L+ GPPGTGKT + I Q+L
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQL 249
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQELG 336
++ GP G+GKT +A A++++LG
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLG 39
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 114 ISAHS-HIKGLGLDENGVPIQMAAGLVG 194
+S H+ IK LD+ G+PI++ +GL+G
Sbjct: 35 VSLHNLRIKPEALDKLGIPIEITSGLIG 62
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 256 AGRALLLAGPPGTGKTAI 309
AG AL ++G PGTGKT +
Sbjct: 191 AGGALYVSGAPGTGKTVL 208
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
L+ GPPGTGKT + I L
Sbjct: 1149 LIQGPPGTGKTKTIIGIISAL 1169
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQ 327
+++ G PGTGKT +A +A+
Sbjct: 11 IIICGTPGTGKTTLAEQVAE 30
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS-TADQENRGIN 411
R + +AGP G+GKT++A I + L + S S A+Q+ R N
Sbjct: 22 RFIGIAGPSGSGKTSVAQLIVKALNLPHVVILSLDSFYKSLNAEQKKRAFN 72
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R ++ GPPGTGK+ + L + L
Sbjct: 387 RLSIIQGPPGTGKSFVTLKAIETL 410
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 265 ALLLAGPPGTGKTAIALAIAQEL 333
+ L GP G GKTA+ A+A+ L
Sbjct: 534 SFLFLGPTGVGKTALTKALAEFL 556
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAI 321
L+ GPPGTGKT L +
Sbjct: 1290 LIQGPPGTGKTKTILGM 1306
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTA 306
G L ++G PGTGKTA
Sbjct: 361 GACLYISGTPGTGKTA 376
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQELG 336
L+ GP GTGK+ I AI LG
Sbjct: 37 LIIGPNGTGKSTIVSAICIGLG 58
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
+L G PG GKT+IA +A+ +
Sbjct: 206 VLIGEPGVGKTSIAEGLARRI 226
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 265 ALLLAGPPGTGKTAIALAIA 324
+ L GP GTGKT + A+A
Sbjct: 616 SFLFCGPSGTGKTLLTKALA 635
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 280 GPPGTGKTAIALAIAQELGTKV 345
GP GTGKT A++ LG V
Sbjct: 1890 GPAGTGKTETVKAVSAYLGKNV 1911
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 223 IVVDMIRSKKMAGRALLLAGPPGTGKTAIALAI 321
I+++ R + GR L GP G+GK+ + AI
Sbjct: 448 ILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAI 480
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+LL G PG GKT +A AI+ V F + G E+
Sbjct: 643 ILLFGYPGCGKTYLASAISSTF--PVQFISIKGPEL 676
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,030
Number of Sequences: 5004
Number of extensions: 61088
Number of successful extensions: 232
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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