Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0194
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 143 1e-34
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 72 4e-13
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 67 8e-12
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 43 2e-04
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 43 2e-04
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 42 3e-04
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 42 4e-04
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 42 4e-04
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 41 6e-04
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 40 0.001
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 40 0.001
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 39 0.003
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 39 0.003
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 39 0.003
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 39 0.003
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 39 0.003
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 39 0.003
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 39 0.003
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 39 0.003
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 39 0.003
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 39 0.003
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 38 0.006
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 38 0.006
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 38 0.008
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 38 0.008
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 38 0.008
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 38 0.008
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 38 0.008
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 37 0.010
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 37 0.010
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 37 0.010
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 37 0.010
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 37 0.010
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 37 0.013
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 37 0.013
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 37 0.013
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 37 0.013
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 36 0.018
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 36 0.018
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 36 0.018
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 36 0.018
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 36 0.023
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 36 0.023
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 36 0.023
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 36 0.023
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 36 0.031
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 36 0.031
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 35 0.041
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 35 0.041
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 35 0.041
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 35 0.041
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 35 0.041
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 35 0.041
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 35 0.041
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 35 0.041
At1g73170.1 68414.m08466 expressed protein 35 0.041
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 35 0.054
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 35 0.054
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 34 0.071
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 34 0.071
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 34 0.071
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 34 0.071
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 34 0.071
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 34 0.094
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 34 0.094
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 34 0.094
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 33 0.12
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 33 0.12
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 33 0.12
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 33 0.16
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 33 0.16
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 33 0.22
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 33 0.22
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 33 0.22
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 33 0.22
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 33 0.22
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 33 0.22
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 32 0.29
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 32 0.29
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 32 0.29
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 32 0.38
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 31 0.50
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 31 0.50
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 31 0.50
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 31 0.66
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 31 0.66
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 31 0.66
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 31 0.66
At3g25620.1 68416.m03189 ABC transporter family protein similar ... 31 0.66
At5g45440.1 68418.m05583 disease resistance protein-related cont... 31 0.88
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 31 0.88
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 31 0.88
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 31 0.88
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 31 0.88
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 31 0.88
At2g34470.1 68415.m04231 urease accessory protein (UREG) identic... 31 0.88
At2g30010.1 68415.m03651 expressed protein 31 0.88
At5g66005.2 68418.m08311 Expressed protein 30 1.2
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 30 1.2
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 30 1.2
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 30 1.2
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 30 1.2
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 30 1.2
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 30 1.2
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 30 1.5
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR... 30 1.5
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 30 1.5
At2g07710.1 68415.m00998 hypothetical protein 30 1.5
At1g33290.2 68414.m04118 sporulation protein-related isoform con... 30 1.5
At1g33290.1 68414.m04117 sporulation protein-related isoform con... 30 1.5
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 30 1.5
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 29 2.0
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 29 2.0
At4g14700.1 68417.m02259 replication control protein, putative s... 29 2.0
At4g12620.1 68417.m01988 replication control protein, putative s... 29 2.0
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 29 2.0
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 29 2.0
At1g77620.1 68414.m09037 expressed protein 29 2.0
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 29 2.7
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 29 2.7
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 29 2.7
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 2.7
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 29 2.7
At5g51570.1 68418.m06394 band 7 family protein similar to hypers... 29 3.5
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR... 29 3.5
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden... 29 3.5
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 29 3.5
At3g42630.1 68416.m04430 pentatricopeptide (PPR) repeat-containi... 29 3.5
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 29 3.5
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 29 3.5
At2g37010.1 68415.m04539 ABC transporter family protein contains... 29 3.5
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 29 3.5
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 28 4.7
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 28 4.7
At5g45490.1 68418.m05588 disease resistance protein-related cont... 28 4.7
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 28 4.7
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 28 4.7
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 28 4.7
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR... 28 4.7
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 28 4.7
At1g61030.1 68414.m06871 expressed protein 28 4.7
At5g60740.1 68418.m07621 ABC transporter family protein similar ... 28 6.2
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 28 6.2
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra... 28 6.2
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra... 28 6.2
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 28 6.2
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 28 6.2
At3g45450.1 68416.m04908 Clp amino terminal domain-containing pr... 28 6.2
At3g10420.2 68416.m01250 sporulation protein-related similar to ... 28 6.2
At3g10420.1 68416.m01249 sporulation protein-related similar to ... 28 6.2
At2g36380.1 68415.m04464 ABC transporter family protein related ... 28 6.2
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 28 6.2
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 28 6.2
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 28 6.2
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 27 8.2
At4g39540.2 68417.m05591 shikimate kinase family protein similar... 27 8.2
At4g39540.1 68417.m05590 shikimate kinase family protein similar... 27 8.2
At4g32920.1 68417.m04685 glycine-rich protein 27 8.2
At3g48195.1 68416.m05258 phox (PX) domain-containing protein con... 27 8.2
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 27 8.2
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 27 8.2
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 27 8.2
At2g19490.1 68415.m02278 recA family protein contains Pfam profi... 27 8.2
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 143 bits (346), Expect = 1e-34
Identities = 81/175 (46%), Positives = 107/175 (61%)
Frame = +3
Query: 114 ISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGDSCRYDKK*ENGRASFTLGRASWY 293
I+ H+HIKGLGL+ G+PI++AAG VGQ AREAAG K+ + + L
Sbjct: 18 IATHTHIKGLGLEPTGIPIKLAAGFVGQLEAREAAGLVVDMIKQKKMAGKALLLAGPPGT 77
Query: 294 WQNCYSSCHRSGTWN*GSFLSNGW**SLQHSRSRKQRY*WENFRRAIGLRIPETKEVYEG 473
+ + + F + S +K ENFRRAIGLRI ETKEVYEG
Sbjct: 78 GKTALALGISQELGSKVPFCPMVGS-EVYSSEVKKTEVLMENFRRAIGLRIKETKEVYEG 136
Query: 474 EVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQLKLDPPIYESFQRKRLKLG 638
EVTEL+P ETE+ GGYGK++SHV+I LKT KGTK LKLDP IY++ ++++ +G
Sbjct: 137 EVTELSPEETESLTGGYGKSISHVVITLKTVKGTKHLKLDPTIYDALIKEKVAVG 191
Score = 102 bits (245), Expect = 2e-22
Identities = 46/55 (83%), Positives = 53/55 (96%)
Frame = +1
Query: 220 GIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYST 384
G+VVDMI+ KKMAG+ALLLAGPPGTGKTA+AL I+QELG+KVPFCPMVGSEVYS+
Sbjct: 53 GLVVDMIKQKKMAGKALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSS 107
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 71.7 bits (168), Expect = 4e-13
Identities = 30/54 (55%), Positives = 43/54 (79%)
Frame = +1
Query: 220 GIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 381
G+++ MIR K+AGRA+L+AG PGTGKTAIA+ +A+ LG + PF + GSE++S
Sbjct: 53 GVILQMIREGKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFS 106
Score = 58.8 bits (136), Expect = 3e-09
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 2/177 (1%)
Frame = +3
Query: 114 ISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGDSCRYDKK*E-NGRASFTLGRASW 290
I AHSHI+GLGLD P ++ G+VGQ AR+AAG + ++ + GRA G+
Sbjct: 18 IGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIREGKIAGRAILIAGQPGT 77
Query: 291 YWQNCYSSCHRS-GTWN*GSFLSNGW**SLQHSRSRKQRY*WENFRRAIGLRIPETKEVY 467
+S G + ++ SL+ S++ ++FR+AIG+RI E EV
Sbjct: 78 GKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALT---QSFRKAIGVRIKEETEVI 134
Query: 468 EGEVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQLKLDPPIYESFQRKRLKLG 638
EGEV E V+ + PA G + +KT + + E+ +++++ G
Sbjct: 135 EGEVVE---VQIDRPASS-GVASKSGKMTMKTTDMETVYDMGAKMIEALNKEKVQSG 187
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 67.3 bits (157), Expect = 8e-12
Identities = 28/54 (51%), Positives = 42/54 (77%)
Frame = +1
Query: 220 GIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 381
G+ +++IR K++GRA+L+AG PGTGK AIA+ IA+ LG + PF + GSE++S
Sbjct: 53 GVTLELIRDGKISGRAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFS 106
Score = 58.0 bits (134), Expect = 5e-09
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 2/177 (1%)
Frame = +3
Query: 114 ISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGDSCRYDKK*E-NGRASFTLGRASW 290
I AHSHI+GLGLD P ++ G+VGQ AR+AAG + + + +GRA G+
Sbjct: 18 IGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAAGVTLELIRDGKISGRAILIAGQPGT 77
Query: 291 YWQNCYSSCHRS-GTWN*GSFLSNGW**SLQHSRSRKQRY*WENFRRAIGLRIPETKEVY 467
+S G + ++ SL+ S++ + FR+AIG+RI E +V
Sbjct: 78 GKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEALT---QAFRKAIGVRIKEETDVI 134
Query: 468 EGEVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQLKLDPPIYESFQRKRLKLG 638
EGEV + + PA G I +KT L + E +++++ G
Sbjct: 135 EGEV---VTISIDRPASSGGSVKKTGKITMKTTDMESNFDLGWKLIEPLDKEKVQSG 188
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
+ +LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 257 KGVLLTGPPGTGKTLLAKAIAGEAG--VPFFSLSGSE 291
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
+ +LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 254 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE 288
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
+ +LL GPPGTGKT +A AIA E G VPF + GSE
Sbjct: 261 KGVLLIGPPGTGKTLLAKAIAGEAG--VPFFSISGSE 295
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
+LL GPPG GKT +A AIA E G VPF M GSE
Sbjct: 466 VLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSE 498
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
+ +LL GPPGTGKT +A AIA E G VPF GSE
Sbjct: 261 KGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSE 295
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
R +LL GPPGTGKT +A A+A E G VPF + SE
Sbjct: 368 RGVLLVGPPGTGKTLLARAVAGEAG--VPFFSVSASE 402
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Frame = +1
Query: 172 KWQPVSWVKSLHVRLQGIVVDMIR------SKKMAGRALLLAGPPGTGKTAIALAIAQEL 333
KW V+ ++S LQ V+ ++ K+ RA LL GPPGTGK+ +A A+A E
Sbjct: 130 KWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEA 189
Query: 334 GTKVPFCPMVGSEVYSTADQENRGINGRIFDV 429
+ F + S++ S E+ + +F++
Sbjct: 190 DS--TFFSVSSSDLVSKWMGESEKLVSNLFEM 219
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAI---AQELGTKVPFCPMVGSEVYS 381
R +LL GPPGTGKT IA A+ A + G KV F G++V S
Sbjct: 416 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLS 458
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
+ +LL G PGTGKT +A AIA E G VPF GSE
Sbjct: 396 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE 430
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
+ LL GPPGTGKT +A A+A E G VPF SE
Sbjct: 284 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE 318
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +1
Query: 232 DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQE 330
D+ + + G+ LLL GPPGTGKT I AIA E
Sbjct: 34 DIFKGCRSPGKGLLLFGPPGTGKTMIGKAIAGE 66
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
+ LL GPPGTGKT +A A+A E G VPF SE
Sbjct: 296 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASE 330
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
R +LL GPPGTGKT +A A+A T F +VGSE
Sbjct: 190 RGVLLYGPPGTGKTMLAKAVANH--TTAAFIRVVGSE 224
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL----GTKVPFCPMVGSEVYS 381
R +LL GPPGTGKT++ A+AQ+L ++ P C ++ +S
Sbjct: 203 RIILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHS 246
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPM--VGSEVYSTADQ 393
RA+L GPPGTGKT+ A IA + G + + P+ V S+ Y +++
Sbjct: 362 RAVLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESER 407
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
+ LL GPPGTGKT +A A A E G VPF + GS+
Sbjct: 356 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSD 390
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
R +LL GPPGTGKT +A AIA+E G
Sbjct: 556 RGILLFGPPGTGKTMLAKAIAKEAG 580
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
R +LL GPPGTGKT +A AIA+E G
Sbjct: 551 RGILLFGPPGTGKTMLAKAIAKEAG 575
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
R +LL GPPGTGKT +A AIA E G
Sbjct: 449 RGILLFGPPGTGKTMMAKAIANEAG 473
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
R +LL+GPPGTGKT A +A+E G +PF G+E
Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAE 561
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFD 426
+ +LL GPPG+GKT IA A+A E G FC + G E+ S E+ + F+
Sbjct: 242 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESESNLRKAFE 294
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFD 426
+ +L GPPG GKT +A AIA E + F + G E+ + E+ IFD
Sbjct: 515 KGVLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEANVREIFD 567
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFD 426
+ +LL GPPG+GKT IA A+A E G FC + G E+ S E+ + F+
Sbjct: 243 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESESNLRKAFE 295
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFD 426
+ +L GPPG GKT +A AIA E + F + G E+ + E+ IFD
Sbjct: 516 KGVLFYGPPGCGKTLLAKAIANE--CQANFISIKGPELLTMWFGESEANVREIFD 568
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 381
+ +LL GPPGTGKT +A A+A E G F + GS + S
Sbjct: 186 KGILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTS 223
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFD 426
+ +LL GPPG+GKT IA A+A E G FC + G E+ S E+ + F+
Sbjct: 242 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESESNLRKAFE 294
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFD 426
+ +L GPPG GKT +A AIA E + F + G E+ + E+ IFD
Sbjct: 515 KGVLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEANVREIFD 567
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 381
+ +LL GPPGTGKT +A A+A E G F + GS + S
Sbjct: 387 KGILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTS 424
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
+ +LL GPPGTGKT +A AIA E G +PF G++
Sbjct: 350 KGVLLHGPPGTGKTLLAKAIAGEAG--LPFFAANGTD 384
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 381
+L GPPG GKT +A AIA E G VPF + +EV S
Sbjct: 270 ILFHGPPGCGKTKLANAIANEAG--VPFYKISATEVIS 305
Score = 33.5 bits (73), Expect = 0.12
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +1
Query: 172 KWQPVSWVKSLHVRLQGIVVDMIRSK---KMAGRAL----LLAGPPGTGKTAIALAIAQE 330
KW V + L ++ +V I+ K G L LL GPPG GKT IA A A E
Sbjct: 526 KWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAAANE 585
Query: 331 LGTKVPFCPMVGSEV 375
G F + G+E+
Sbjct: 586 AGAN--FMHIKGAEL 598
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +1
Query: 172 KWQPVSWVKSLHVRLQGIVV------DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQE 330
KW V+ + L +V+ D+ + R LLL GPPG GKT +A A+A E
Sbjct: 214 KWDDVAGLNGAKQALLEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE 272
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGT 339
+ +L+ GPPGTGKT +A A+A E GT
Sbjct: 273 KGVLMFGPPGTGKTLLAKAVATECGT 298
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
+ LL GPPGTGKT +A A A E + VPF + GS+
Sbjct: 361 KGALLVGPPGTGKTLLAKATAGE--SAVPFLSISGSD 395
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
+ +LL GPPGTGKT +A AIA+E G
Sbjct: 120 KGVLLYGPPGTGKTMLAKAIAKESG 144
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 36.7 bits (81), Expect = 0.013
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +1
Query: 241 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRI 420
+S K R ++ GPPGTGKT +A IA++ G + + M G +V Q I+ I
Sbjct: 379 KSHKAPFRNMMFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDVAPLGAQAVTKIH-EI 435
Query: 421 FD 426
FD
Sbjct: 436 FD 437
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 36.7 bits (81), Expect = 0.013
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKVPFCP-MVGSEVYSTADQENRGIN 411
+L GPPGTGKT ALAIA +L F P + S V ++RGIN
Sbjct: 33 MLFYGPPGTGKTTTALAIAHQL-----FGPELYKSRVLELNASDDRGIN 76
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 36.7 bits (81), Expect = 0.013
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKVPFCP-MVGSEVYSTADQENRGIN 411
+L GPPGTGKT ALAIA +L F P + S V ++RGIN
Sbjct: 45 MLFYGPPGTGKTTTALAIAHQL-----FGPELYKSRVLELNASDDRGIN 88
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 36.3 bits (80), Expect = 0.018
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +1
Query: 241 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRI 420
+S + R ++ GPPGTGKT +A IA++ G + + M G +V Q I+ +I
Sbjct: 364 KSHQAPFRNMMFYGPPGTGKTMVAREIARKSG--LDYAMMTGGDVAPLGSQAVTKIH-QI 420
Query: 421 FD 426
FD
Sbjct: 421 FD 422
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
+ +LL GPPGTGKT +A A+A E G
Sbjct: 999 KGILLFGPPGTGKTMLAKAVATEAG 1023
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE 330
R LLL GPPGTGKT++ A+ QE
Sbjct: 57 RGLLLYGPPGTGKTSLVRAVVQE 79
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
+ +LL GPPGTGKT +A A+A E G
Sbjct: 986 KGILLFGPPGTGKTMLAKAVATEAG 1010
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 214 LQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTK 342
L+ I V +R G+ + L+GPPG GKT+I +IA+ L K
Sbjct: 443 LEFIAVGRLRGTSQ-GKIICLSGPPGVGKTSIGRSIARALNRK 484
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGT 339
+ +LL GPPGTGKT +A A+A E T
Sbjct: 146 KGILLFGPPGTGKTMLAKAVATECNT 171
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGT 339
+ +LL GPPGTGKT +A A+A E T
Sbjct: 137 KGILLFGPPGTGKTMLAKAVATECNT 162
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 226 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 345
++D I R LL GPP +GKT + LA+A LGT +
Sbjct: 150 ILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGTNL 189
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 214 LQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTK 342
L+ I V +R G+ + L+GPPG GKT+I +IA+ L K
Sbjct: 426 LEFIAVGRLRGTSQ-GKIICLSGPPGVGKTSIGRSIARALDRK 467
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQEL 333
L+L+GPPGTGKT LA+A EL
Sbjct: 51 LILSGPPGTGKTTSILALAHEL 72
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE 330
+ +LL GPPGTGKT +A AIA+E
Sbjct: 123 KGVLLYGPPGTGKTMLAKAIARE 145
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ +LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 196 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL 231
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ +LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 196 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL 231
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 35.1 bits (77), Expect = 0.041
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +1
Query: 193 VKSLH---VRLQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMV 363
VK +H V+L G V ++ K +LLAG G GKT + +A L + C ++
Sbjct: 151 VKIVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLI 210
Query: 364 GSEVYSTA 387
+VY A
Sbjct: 211 AGDVYRPA 218
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE 330
+ +LL GPPGTGKT +A A+A+E
Sbjct: 856 KGILLFGPPGTGKTMLAKAVAKE 878
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
R +LL G PGTGKT +A A+A E +VPF SE
Sbjct: 359 RGVLLVGLPGTGKTLLAKAVAGE--AEVPFISCSASE 393
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 241 RSKKMAGRALLLAGPPGTGKTAIALAIAQELG 336
R K+ G +LL GPPG GKT +A A+A E G
Sbjct: 438 RGVKIPG-GILLCGPPGVGKTLLAKAVAGEAG 468
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQEL 333
LLL GPPGTGKT+ LA+A++L
Sbjct: 75 LLLYGPPGTGKTSTILAVARKL 96
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 232 DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELG 336
+++R G +LLL GPPG GKT + +A+ LG
Sbjct: 188 NLLRDLVQDGNSLLLIGPPGVGKTTMIREVARMLG 222
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
R +LL G PGTGKT +A A+A E + VPF SE
Sbjct: 363 RGVLLVGLPGTGKTLLAKAVAGE--SDVPFISCSASE 397
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ +L GPPGTGKT +A A+A T F ++GSE+
Sbjct: 203 KGVLCYGPPGTGKTLLARAVANR--TDACFIRVIGSEL 238
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQELGTK 342
G L GPPG GKT++A +IA LG K
Sbjct: 401 GPVLCFVGPPGVGKTSLASSIAAALGRK 428
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 34.3 bits (75), Expect = 0.071
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ ++L G PGTGKT +A A+A T F +VGSE+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 258
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 34.3 bits (75), Expect = 0.071
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ ++L G PGTGKT +A A+A T F +VGSE+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 258
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 34.3 bits (75), Expect = 0.071
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ +L GPPG+GKT +A A+A G F +VGSE+
Sbjct: 240 KGVLCYGPPGSGKTLVARAVANRTG--ACFIRVVGSEL 275
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 34.3 bits (75), Expect = 0.071
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 208 VRLQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQE 330
V+L + D+ S +LL GPPGTGKT +A A+A E
Sbjct: 674 VQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATE 714
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ +LL GPPGTGKT +A AIA + F +V S +
Sbjct: 174 KGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAI 209
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 381
+ +L+ GPPGTGKT++A A+ G V F + G E+ S
Sbjct: 419 KGVLIHGPPGTGKTSLARTFARHSG--VNFFSVNGPEIIS 456
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ +LL GPPGTGKT +A AIA + F +V S +
Sbjct: 174 KGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAI 209
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGKT++ AIA L
Sbjct: 246 RGYLLYGPPGTGKTSLVAAIANYL 269
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
R +LL GPPGTGKT A +A++ G + + M G +V
Sbjct: 398 RNILLHGPPGTGKTMAARELARKSG--LDYALMTGGDV 433
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQEL 333
GR LL GPPG+GK+ + LA+A +L
Sbjct: 186 GRMTLLLGPPGSGKSTLLLALAGKL 210
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVP 348
+ +LL GPPGTGKT +A I + L K P
Sbjct: 251 KGMLLFGPPGTGKTLMARQIGKMLNGKDP 279
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
LL GP G+GKTA+A I + + P+ +V +E
Sbjct: 534 LLEGPSGSGKTALAATIG--IDSDFPYVKIVSAE 565
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1
Query: 256 AGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
A R +L+ G GTGKT++ALAIA E +VP + E+
Sbjct: 456 APRGVLIVGERGTGKTSLALAIAAE--ARVPVVNVEAQEL 493
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
R LL GPPGTGK+++ A+A LG
Sbjct: 239 RGYLLYGPPGTGKSSLIAAMANYLG 263
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ +LL GPPGTGKT +A A A + T F + G ++
Sbjct: 206 KGVLLYGPPGTGKTLMARACAAQ--TNATFLKLAGPQL 241
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKV 345
+LL GP GTGKT +A A+A E G +
Sbjct: 773 ILLFGPSGTGKTMLAKAVATEAGANL 798
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQEL 333
GR LL GPP +GKT + LA+A +L
Sbjct: 197 GRMTLLLGPPSSGKTTLLLALAGKL 221
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQEL 333
GR LL GPP +GKT + LA+A +L
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKL 204
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
+ +LL GPPGTGKT +A A A + T F + G ++
Sbjct: 205 KGVLLYGPPGTGKTLMARACAAQ--TNATFLKLAGPQL 240
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
R LL GPPGTGK+++ A+A LG
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLG 262
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+++ AIA L
Sbjct: 248 RGYLLYGPPGTGKSSLIAAIANHL 271
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +1
Query: 226 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 345
V+ ++R+ +++ + +LL G PG GKT++ LA+ + G KV
Sbjct: 1735 VLRVLRAMQLS-KPILLEGSPGVGKTSLILALGKYSGHKV 1773
Score = 31.9 bits (69), Expect = 0.38
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 151 MKMVFLFKWQPVSWVK--SLHVRLQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIA 324
MK+ L W S+ + +H R++ +M+ R +LL GP G+GK+A+ +A
Sbjct: 316 MKIRRLDTWDVNSFSEPFEIHSRVKKSF-EMVSLAVSQKRPVLLYGPSGSGKSALIRKLA 374
Query: 325 QELGTKVPFCPM 360
E G V F M
Sbjct: 375 DESGNHVVFIHM 386
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFD 426
R +L GPPGTGKT A +A+ G + + M G +V Q I+ ++FD
Sbjct: 399 RNILFYGPPGTGKTMAARELARRSG--LDYALMTGGDVAPLGAQAVTKIH-QLFD 450
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 214 LQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTK 342
L+ I V +R G+ + L+GP G GKT+I +IA+ L K
Sbjct: 435 LEFIAVGGLRGTSQ-GKIICLSGPTGVGKTSIGRSIARALDRK 476
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 31.5 bits (68), Expect = 0.50
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +1
Query: 142 WGWMKMVFLFKWQPVSWVKSLHVRLQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAI 321
W +K VFL + +S V++ ++ I+ D + GR LL GPPG GKT + A+
Sbjct: 129 WNSLKHVFLDLLK-LSGVRTNEANIK-ILTD-VSGIISPGRLTLLLGPPGCGKTTLLKAL 185
Query: 322 AQEL 333
+ L
Sbjct: 186 SGNL 189
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+++ AIA +
Sbjct: 240 RGYLLYGPPGTGKSSMVAAIANHM 263
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 226 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 333
V +IR K+M LL GPPG GKT + LA++ L
Sbjct: 155 VSGIIRPKRMT----LLLGPPGCGKTTLLLALSGRL 186
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQELGTKV 345
GR LL GPPG GKT + A++ L V
Sbjct: 164 GRMTLLLGPPGCGKTTLLQALSGRLSHSV 192
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIA 324
R LL GPPGTGK+++ AIA
Sbjct: 32 RGYLLYGPPGTGKSSLVAAIA 52
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+++ A+A L
Sbjct: 300 RGYLLYGPPGTGKSSLIAAMANHL 323
>At3g25620.1 68416.m03189 ABC transporter family protein similar to
GB:AAC61893 from [Bactrocera tryoni] (Insect Mol. Biol.
6 (4), 343-356 (1997))
Length = 467
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +1
Query: 190 WVKSLHVRLQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGS 369
W S + +V+ + G L + GP G+GKT + A+A L K+
Sbjct: 87 WFGSQEPKPNRLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNG 146
Query: 370 EVYSTADQENRG 405
E ++++ + G
Sbjct: 147 EPFTSSVKRKTG 158
>At5g45440.1 68418.m05583 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 346
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/69 (27%), Positives = 38/69 (55%)
Frame = +1
Query: 214 LQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQ 393
LQ ++D +S K+ ++L++ G G GKTA+ I + + + P + ++S +
Sbjct: 65 LQHFLLDQ-KSYKLF-KSLVVVGEYGVGKTALCQQIFNDYDVRNAYAPRIWVSMHSNESK 122
Query: 394 ENRGINGRI 420
E G++G+I
Sbjct: 123 E--GLDGKI 129
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+++ A+A L
Sbjct: 254 RGYLLYGPPGTGKSSLVAAMANYL 277
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+++ A+A L
Sbjct: 254 RGYLLYGPPGTGKSSLVAAMANYL 277
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+++ A+A L
Sbjct: 246 RGYLLYGPPGTGKSSLVAAMANYL 269
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 375
GR LL GPPG GKT + A++ + V VG EV
Sbjct: 167 GRMTLLLGPPGCGKTTLLQALSGKFSDSV----KVGGEV 201
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKV 345
R LL GPPGTGK+ + A+A L +
Sbjct: 237 RGYLLHGPPGTGKSTMIAAMANHLNYSI 264
>At2g34470.1 68415.m04231 urease accessory protein (UREG) identical
to urease accessory protein UREG GI:4324678 from
[Arabidopsis thaliana]; contains Pfam profile: PF01495
HypB/UreG nucleotide-binding domain
Length = 275
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 274 LAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRI 420
+ GP GTGKTA+ LA+ + L K V +++++ D E NG +
Sbjct: 78 IGGPVGTGKTALMLALCRFLRDKYSLA-AVTNDIFTKEDGEFLVKNGAL 125
>At2g30010.1 68415.m03651 expressed protein
Length = 398
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 420 NSPINTSVFLICCAVNFTTNHWTERNLSSKFLSDGKS 310
NSP+ FL ++ N WT R+ +S GKS
Sbjct: 266 NSPLTRVFFLSVSPTHYNPNEWTSRSKTSTITQGGKS 302
>At5g66005.2 68418.m08311 Expressed protein
Length = 164
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQELGTKVP 348
G+ LL+ GPPG GKT + + + + P
Sbjct: 5 GKCLLVTGPPGVGKTTLIMRVLDMMRVSNP 34
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
+A+LL+G PG GKT A ++Q LG
Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLG 418
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+ + AIA L
Sbjct: 244 RGYLLFGPPGTGKSTMIAAIANFL 267
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPP +GKT + LA+A +L
Sbjct: 174 RMTLLLGPPSSGKTTLLLALAGKL 197
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+++ A+A L
Sbjct: 244 RGYLLYGPPGTGKSSLIAAMANYL 267
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+++ A+A L
Sbjct: 245 RGYLLYGPPGTGKSSLIAAMANYL 268
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPP +GKT + LA+A +L
Sbjct: 196 RMTLLLGPPSSGKTTLLLALAGKL 219
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+++ A+A L
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYL 261
>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMV 363
R + + GPPG GKT IA + + PF ++
Sbjct: 235 RMIGILGPPGIGKTTIATCMFDRFSRRFPFAAIM 268
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+ + AIA L
Sbjct: 229 RGYLLFGPPGTGKSTMISAIANFL 252
>At2g07710.1 68415.m00998 hypothetical protein
Length = 150
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 213 PHVQTLDPRDRLPFE*EHHFHPTPSLLYDCEQRSLCVLAV 94
PH +LDP L + E H HP ++ DC+ +SL A+
Sbjct: 84 PHHHSLDPS--LCHQVEFHHHPPLDIILDCQLQSLLDSAI 121
>At1g33290.2 68414.m04118 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 303
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 229 VDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 333
+DM+ G+++L G PG GKT + IA+ L
Sbjct: 154 IDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVL 188
>At1g33290.1 68414.m04117 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 379
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 229 VDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 333
+DM+ G+++L G PG GKT + IA+ L
Sbjct: 154 IDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVL 188
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFDVL 432
+ LLL G PG GKT +A A+ G +V E+ ++ ++ I RI DV+
Sbjct: 346 KILLLCGAPGLGKTTLAHIAAKHCGYRV-------VEINASDERSASAIETRILDVV 395
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMV 363
R + + GPPG GKT IA + ++ K F +
Sbjct: 256 RMIGILGPPGIGKTTIARVLYDQISEKFQFSAFI 289
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R+ L GPPGTGK+++ A+A L
Sbjct: 221 RSYFLYGPPGTGKSSLVAAMANYL 244
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 238 IRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 345
I + GR + + G PGTGKT L++ + L +V
Sbjct: 452 ISDDQCLGRCMYIHGVPGTGKTISVLSVMKNLKAEV 487
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 238 IRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 345
I + GR + + G PGTGKT L++ + L +V
Sbjct: 457 ISDDQCLGRCMYIHGVPGTGKTISVLSVMKNLKAEV 492
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKV 345
R LL GPPGTGK+ + A+A L +
Sbjct: 237 RGYLLYGPPGTGKSTMIAAMANLLNYSI 264
>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
II gene enhancer-binding protein)(RIPE3B-binding complex
3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
identical to putative helicase (atpc-2 gene) cDNA
NCBI_gi:11191230
Length = 639
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 232 DMIRSKKMAGRALLLAGPPGTGKTAIALAIA-QEL--GTKVPFC 354
D I + LL GPPGTGKT + I QE+ G+K+ C
Sbjct: 196 DAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRGSKILAC 239
>At1g77620.1 68414.m09037 expressed protein
Length = 1151
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKV 345
LL+ GP G+GK+A A A+E G K+
Sbjct: 388 LLIVGPAGSGKSAAIHACAKEQGFKI 413
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+ + A+A L
Sbjct: 244 RGYLLFGPPGTGKSTMIAAMANLL 267
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKV 345
R LL GPPGTGK+ + A+A L +
Sbjct: 242 RGYLLYGPPGTGKSTMISAMANLLNYNI 269
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 193 VKSLHVRLQGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 333
VK++ + V + R ++ +G L L GP G GKT +A A+A++L
Sbjct: 543 VKAVAAAILRSRVGLGRPQQPSGSFLFL-GPTGVGKTELAKALAEQL 588
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQELGT 339
GR LL GPPG+GK+ + A++ + T
Sbjct: 172 GRLTLLLGPPGSGKSTLLKALSGKTET 198
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+ + A+A L
Sbjct: 241 RGYLLFGPPGTGKSTMIAAMANFL 264
>At5g51570.1 68418.m06394 band 7 family protein similar to
hypersensitive-induced response protein [Zea mays]
GI:7716468; contains Pfam profile PF01145: SPFH domain /
Band 7 family
Length = 292
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 375 LQHSRSRKQRY*WENFRRAIGLRIPETKEVYEGEVTELTPVETENPAGGYGKTVSHVII 551
LQ+ + + Q Y ++ R + + + +GEV + E E G YG ++ H+++
Sbjct: 92 LQNPKEQIQAYVFDVVRALVPMMTLDALFEQKGEVAKSVLEELEKVMGAYGYSIEHILM 150
>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1231
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRIFDVL 432
R + + G PG GKT +A + +L K+ C + + +A+Q + + R+ + L
Sbjct: 239 RIVEVVGMPGIGKTYLAKKLFAKLKKKINHCVFIEFKREMSAEQGSEWLQKRLVEGL 295
>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) identical
to peroxisomal ABC transporter PXA1 GI:15320529 from
[Arabidopsis thaliana]; contains Pfam profile PF00005:
ABC transporter;
Length = 1337
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +1
Query: 217 QGIVVDMIRSKKMAGRALLLAGPPGTGKTAI 309
Q ++ + + ++G++LL+ GP G+GKT++
Sbjct: 1109 QKLMASKLSCEIVSGKSLLVTGPNGSGKTSV 1139
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 226 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 333
V +IR K+M LL GPP GKT + LA++ L
Sbjct: 157 VSGIIRPKRMT----LLLGPPSCGKTTLLLALSGRL 188
>At3g42630.1 68416.m04430 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 415
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -3
Query: 213 PHVQTLDPRDRLPFE*EHHFHPTPSLLYDCEQRSLCVLAVLFTSSIFMLKAALLF 49
P VQTL R RLP F T S+ R+LC L + F + F+L+A ++
Sbjct: 52 PLVQTLSQR-RLPDVAHEIFLQTKSVNLLPNYRTLCALMLCFAENGFVLRARTIW 105
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIA 324
R LL GPPGTGK+ + A+A
Sbjct: 237 RGYLLYGPPGTGKSTMIAAMA 257
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPGTGK+ + A+A L
Sbjct: 240 RGYLLFGPPGTGKSTMISAMANFL 263
>At2g37010.1 68415.m04539 ABC transporter family protein contains
ABC transporter domain, Pfam:PF00005
Length = 1063
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 196 KSLHVRLQGIVVDMIRS---KKMAGRALLLAGPPGTGKTAIALAIA 324
K L + L+G ++RS K M GR + GP G GKT A+A
Sbjct: 468 KDLTLTLKGKHKHILRSVTGKIMPGRVSAVMGPSGAGKTTFLSALA 513
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 211 RLQGIVVDMIRSKKMAGRAL-LLAGPPGTGKTAIALAIAQEL 333
+LQ I V + S M + L+ GPPGTGKT +AI L
Sbjct: 1107 QLQAISVAIGSSNLMKAFDISLIQGPPGTGKTRTIVAIISGL 1148
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 274 LAGPPGTGKTAIALAIAQELGT 339
L G PG GKTAIA +AQ + +
Sbjct: 300 LIGEPGVGKTAIAEGLAQRIAS 321
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
L+ GPPGTGKT + AI +
Sbjct: 507 LIQGPPGTGKTVTSAAIVYHM 527
>At5g45490.1 68418.m05588 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 354
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTADQENRGINGRI 420
++L++ G G GKTA+ I + K + P V + + +E G++G+I
Sbjct: 85 KSLVIVGEYGVGKTALCQKIFNDEAVKSVYAPRVWVSMENKESKE--GLDGKI 135
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 280 GPPGTGKTAIALAIAQELGTKVPFCPMVGS 369
GP G GKT IA A+ +L T F +G+
Sbjct: 212 GPAGIGKTTIARALYNQLSTNFQFKCFMGN 241
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R + + GPPG GKT IA A+ ++
Sbjct: 215 RMIGIVGPPGIGKTTIARALRDQI 238
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQ 327
+L+ GPPG+GKT +A A A+
Sbjct: 596 ILIYGPPGSGKTILARAAAK 615
>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. A false
intron was added between exons 2 and 3 to circumvent a
frameshift caused by a sequencing error, as per Blake
Meyers (bcmeyers@vegmail.ucdavis.edu)
Length = 1308
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 235 MIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 333
++R K R + ++GP G GKT IA A+ +L
Sbjct: 196 ILRLKSEKARMVGISGPSGIGKTTIAKALFSKL 228
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 274 LAGPPGTGKTAIALAIAQELGT 339
L G PG GKTAIA +AQ + +
Sbjct: 321 LIGEPGVGKTAIAEGLAQRIAS 342
>At1g61030.1 68414.m06871 expressed protein
Length = 840
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 165 EHHFHPTPSLLYDCEQRSLCVLAVLFTSSIFML 67
+HH PSL YD ++ LC+L+ +++ +L
Sbjct: 591 DHHVTEQPSLTYDIDKGCLCLLSDCLLTAVKVL 623
>At5g60740.1 68418.m07621 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1061
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +1
Query: 196 KSLHVRLQGIVVDMIR---SKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVG 366
K L + L+G ++R K GR + GP G GKT A L K P C M G
Sbjct: 502 KDLSITLKGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTA----LTGKAPGCIMTG 557
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +1
Query: 271 LLAGPPGTGKT---AIALAIAQELGTKVPFCPMVGSEVYSTADQ 393
L+ GPPGTGKT A L+ +L K C + + + A +
Sbjct: 269 LIWGPPGTGKTKTVATLLSTLMQLKCKTVVCAPTNTTIVAVASR 312
>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 459
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +1
Query: 241 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 345
+ K + ++++GP G GK+ +A+ +A+ L ++
Sbjct: 44 KKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEI 78
>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 463
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +1
Query: 241 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 345
+ K + ++++GP G GK+ +A+ +A+ L ++
Sbjct: 44 KKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEI 78
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAI 321
+L+ GPPGTGKT L+I
Sbjct: 276 VLIQGPPGTGKTQTILSI 293
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQEL 333
GR LL GPP GKT + A++ L
Sbjct: 200 GRLTLLLGPPSCGKTTLLKALSGNL 224
>At3g45450.1 68416.m04908 Clp amino terminal domain-containing
protein contains Pfam profile: PF02861 Clp amino
terminal domain
Length = 341
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 226 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGT 339
VV ++ + A L+ G PG GK AIA IAQ + +
Sbjct: 166 VVQILARRTCRNNACLI-GKPGVGKRAIAEGIAQRIAS 202
>At3g10420.2 68416.m01250 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 684
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 232 DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 333
++IR G ++L+ G PG GKT + IA+ L
Sbjct: 204 EIIRDLIEGGGSILVIGSPGVGKTTLIREIARML 237
>At3g10420.1 68416.m01249 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 547
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 232 DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 333
++IR G ++L+ G PG GKT + IA+ L
Sbjct: 204 EIIRDLIEGGGSILVIGSPGVGKTTLIREIARML 237
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPP +GKT + A+A +L
Sbjct: 200 RMTLLLGPPSSGKTTLLQALAGKL 223
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 265 ALLLAGPPGTGKTAIALAIAQEL 333
+ L GP G GKT +A A+A++L
Sbjct: 601 SFLFLGPTGVGKTELAKALAEQL 623
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPP +GKT + A+A +L
Sbjct: 202 RMTLLLGPPSSGKTTLLQALAGKL 225
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +1
Query: 235 MIRSKKMAGR--ALLLAGPPGTGKTAIALAI 321
++RS + R +++ GPPGTGKT+IA ++
Sbjct: 127 LLRSAVESNRLPSIVFWGPPGTGKTSIAKSL 157
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQ 327
LL+ G PGTGK+ A A+A+
Sbjct: 16 LLITGTPGTGKSTTASALAE 35
>At4g39540.2 68417.m05591 shikimate kinase family protein similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 300
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQELG 336
GR++ L G G+GKT + +A+ LG
Sbjct: 98 GRSMYLVGMMGSGKTTVGKIMARSLG 123
>At4g39540.1 68417.m05590 shikimate kinase family protein similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 300
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQELG 336
GR++ L G G+GKT + +A+ LG
Sbjct: 98 GRSMYLVGMMGSGKTTVGKIMARSLG 123
>At4g32920.1 68417.m04685 glycine-rich protein
Length = 1432
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 570 PWPFLVL*SHEILFFHSLQQDFLFQQVLTQLLHPHILLWFQVYAGL 433
P P + + ++SLQ D + +L+QL+ P W++ AGL
Sbjct: 1086 PMPLIFGGDGSYMAYYSLQSDDILTSLLSQLVPP--TTWYRFVAGL 1129
>At3g48195.1 68416.m05258 phox (PX) domain-containing protein
contains Pfam profile PF00787: PX domain
Length = 938
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 408 NTSVFLICCAVNFTTNHWTERNLSSKFLSDGK-SYSSFASTRRPCQE 271
N + FLI + F TN W E L + L D + +S F + C E
Sbjct: 170 NDNPFLINSSTAFGTNDWDEFELEATELVDTQFDFSGFEKRDKGCTE 216
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKV 345
R LL G PG GKT++ AIA+ L V
Sbjct: 200 RYYLLHGLPGAGKTSLVAAIAKYLNFDV 227
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R +LL G PGTGKT + A+ L
Sbjct: 754 RGILLHGHPGTGKTLVVRALIGSL 777
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
++ G PG GKTAIA +AQ +
Sbjct: 284 VIIGEPGVGKTAIAEGLAQRI 304
>At2g19490.1 68415.m02278 recA family protein contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 430
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 259 GRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 372
GR + + GP +GKT +AL + E + C V +E
Sbjct: 112 GRVVEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAE 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,613
Number of Sequences: 28952
Number of extensions: 317576
Number of successful extensions: 1150
Number of sequences better than 10.0: 163
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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