Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0193
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    31   0.15 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    28   1.0  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    28   1.4  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   2.4  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   3.1  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    26   4.1  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   4.1  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   5.5  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    25   7.2  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    25   7.2  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   9.5  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   9.5  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   9.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.5  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.5  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +1

Query: 127 MVQSHKNKPTQALSNSIANASARKSAVHSMGS-TRQPSLPESVA 255
           +  S  +KP+  + +S++ A+A K+A+HSM S T   +LP +++
Sbjct: 505 LFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPSNLS 548


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 429 PSAEPKLPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCPRQGPFQNQAPY 596
           P ++ +L    S + S  T Q   P+     R EP+ S     CP   P Q+  P+
Sbjct: 117 PLSDSQLDTGDSPATSETTVQDYNPQVQSYCRPEPLSSNHVRSCPPFPPTQHHHPH 172


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 132 PKPQKQANASLIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSS 266
           P P   A+AS +K + +   +  +S+     PP + ++++R RS+
Sbjct: 65  PSPASSASASPVKKSAEALAERSNSSMGTFDPPPRYSKIARARST 109


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 154 TQALSNSIANASARKSAVHSMGSTRQPSLPESVAIAVPRPKS 279
           T+  +N +   S  K  VH   +TR+P+ P++      + KS
Sbjct: 129 TENFANDLDTTSDSKPVVHQTRATRKPAQPKAEKSTTSKSKS 170


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 544 SLHTGSALATGPDFGSGNCSVALETDFE 461
           S+H+      G D G+GN +  LETD E
Sbjct: 15  SVHSREVSVNGSDSGTGNDAYKLETDDE 42


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +3

Query: 75  TTKGSP-HSGKNNRWGH*HGPKPQKQANASLIKLNRKRKCKEISSTQHGLHPPTKPTRVS 251
           T  G P H G N  W     P+   ++NAS            + S     HP T    V 
Sbjct: 105 TFLGCPVHIGPNGEWAKRRKPRTTVESNAS---------SSHLVSKPESSHPSTGSFEV- 154

Query: 252 RNRSSKAKISITIMLIILLCPLGTYPATV-SPTI 350
           ++ SSK++ S+++  ++ +  + T  ATV  PT+
Sbjct: 155 KSSSSKSRSSMSLFHVVFVLNVPT--ATVYRPTV 186


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
 Frame = -3

Query: 269 LGTAIATDSGRLGWRVEPMLCTAD-FLALA---FAIEFDKACVGLFLW--LWTMSMTPPI 108
           LGTAI   S R+   +E +  T   F+AL    F  ++D + +G FL+  LW++ +TP I
Sbjct: 136 LGTAITFFSARI--ILEAVFITLGVFVALTAFTFQSKWDFSRLGGFLYVSLWSLILTPLI 193

Query: 107 IF 102
            F
Sbjct: 194 FF 195


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 8/41 (19%)
 Frame = +1

Query: 139 HKNKPTQALSNSIANA-SARK-------SAVHSMGSTRQPS 237
           HK++  Q L NS  N+ +ARK       SA H++GST+ P+
Sbjct: 179 HKSQSYQHLKNSPPNSRTARKPVPRRANSASHNLGSTKSPN 219


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +1

Query: 145 NKPTQALSNSIANASARKSAVHSMGSTRQPSLPESVAIAVPRPKS 279
           N PT    +S   +++ +  V  +G++ + SLP+  A  +P+ ++
Sbjct: 291 NSPTLKNDSSFFGSASVRPTVSPIGTSFRQSLPDISAFGIPKTET 335


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 453 RSGSKSVSRATEQFPEPKSGPV 518
           RS S+S+S  TEQ   PK  PV
Sbjct: 186 RSSSRSISPVTEQPQSPKIQPV 207


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 94  IPEKIIGGVIDM-VQSHKNKPTQALSNSIANASARKSAVHSMGSTRQPSLPESVAIA 261
           I  K  GG+     +S+K KPT+    ++  ASA KS +         +LP  V  A
Sbjct: 13  IASKPKGGIRKRRARSNKPKPTKNAKPAVNTASALKSVISEESKIIVSNLPTDVTEA 69


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 340 VQQFQTRAAMVGLKPKDSFKTSPNNQGNQFQAQNPNY 450
           VQ+F + A  +G+ P  + +++ N+   +   + PNY
Sbjct: 417 VQKFNSLAYRIGIVPIAAIRSANNDFELEINPEGPNY 453


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 486 EQFPEPKSGPVARAEPVWSEPT 551
           + FP+P S PV  +E V  EP+
Sbjct: 493 KSFPKPASSPVTFSEDVKKEPS 514


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 153 WLVFVALDHVNDPTDYFFRNVENLSWFQQ 67
           WL+F+ +      +D+F  N+  +SW  Q
Sbjct: 118 WLIFLFITIGISASDFFSTNLVTISWLLQ 146


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 459  GSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCPRQGPFQNQAPYVGNNQNQLPVP-TG 635
            GS   ++A    P P + P  +A P  + PT   P  GP        GN     PVP TG
Sbjct: 1873 GSDLSNQAAPPPPPPMALP--KAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTG 1930

Query: 636  Q 638
            +
Sbjct: 1931 K 1931


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 132 PKPQKQANASLIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISI 284
           P     A   + K   K K +   S + GL+P   PT  S+ RS +   S+
Sbjct: 345 PLDHSSAEKEMQKAPAKNKRRRTGSLETGLYPKESPT-PSKKRSKRVLWSL 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,468
Number of Sequences: 5004
Number of extensions: 53395
Number of successful extensions: 189
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)