Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0193
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 32 0.46
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887... 31 1.1
08_01_0898 - 8856146-8856566,8857607-8857811,8858776-8858820,886... 30 1.4
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 29 2.4
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518... 29 3.2
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 29 3.2
09_02_0013 + 2968779-2969772,2969801-2969919,2970012-2970179 29 4.3
05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294... 29 4.3
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497... 29 4.3
05_03_0510 + 14864430-14864792,14865234-14865485,14865573-148656... 28 5.6
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881 28 7.5
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 28 7.5
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 27 9.9
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 31.9 bits (69), Expect = 0.46
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 447 LPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCPRQGPFQNQAPYVGNN 608
+P SG+ T P+P +GP + A P S P P Q PF P GN+
Sbjct: 177 IPNSGAPPAMYQTNP-PQP-AGPTSGAPPPVSAPPPAAPPQAPFSYAQPPEGNH 228
>02_02_0315 +
8872199-8872815,8873141-8873243,8873346-8873405,
8873558-8873632,8873718-8873792,8873876-8873956,
8874466-8874657,8874762-8874947,8875047-8875094
Length = 478
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 429 PSAEPKLPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCPRQGPFQN 584
P A + ++ S+S S ATE P S PVA A P + P P P+ N
Sbjct: 413 PLAPAEATKNESESESAATESAPAVNSAPVAEAAPEAAPPAAPRP-LSPYPN 463
>08_01_0898 -
8856146-8856566,8857607-8857811,8858776-8858820,
8860204-8860608,8861175-8861298
Length = 399
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 488 TISRTKIRSSCKGRTSME*TNLTMSKAGPISESSPICW**SKSITSANWAV 640
TI I SC G T E N+T +K G S S+P+ I A WA+
Sbjct: 52 TIPLQTIEESCAGGTYRETHNMTRNKQGSSSSSTPV------QIYEAGWAL 96
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 429 PSAEPKLPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEP 548
P +PK P+ G K + + P+PK GP +P W P
Sbjct: 194 PKPKPKPPKPGPKPKPKPPKPGPKPKPGP---PQPWWPIP 230
>09_06_0192 -
21450158-21450276,21451084-21451573,21451750-21451862,
21451992-21452376,21452461-21452529,21453165-21453264,
21454465-21454637,21454737-21454782,21454879-21454954,
21455160-21455196,21455799-21456041
Length = 616
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +3
Query: 54 HNDSAVGTTKGSPHSGKNNRWGH*HGPKPQKQANASLIKLNRKRKCKEISSTQHGLHPPT 233
H S +++ H+G + H GP+P AS + C+ + S QHG P
Sbjct: 484 HPSSTETSSEQPTHNGTAST-SHSAGPQPSSAPYASSTITTHRVNCQSLPSQQHGSVPQV 542
Query: 234 KPTR 245
R
Sbjct: 543 SAER 546
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 169 NSIANASARKSAVHSMGSTRQPSLPESVAIAVPRP 273
+ I A +RK A +GS +P V IAVP P
Sbjct: 321 DKIQQADSRKPAFRWLGSAGKPKAENGVTIAVPPP 355
>09_02_0013 + 2968779-2969772,2969801-2969919,2970012-2970179
Length = 426
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 488 TISRTKIRSSCKGRTSME*TNLTMSKAGPISESSPI 595
TI I SC G T E N+T ++ G S S+P+
Sbjct: 291 TIPLQTIEESCAGGTYRETRNMTRNEQGSSSSSTPV 326
>05_05_0192 -
23128460-23128502,23129130-23129216,23129299-23129443,
23130812-23130872,23131046-23131164,23131320-23131374
Length = 169
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 147 VFVALDHVNDPTDYFFRNVENLSWF 73
VF DH D+FF++ EN+S+F
Sbjct: 52 VFSTKDHRQVKNDFFFKSAENISFF 76
>03_05_0861 -
28348669-28348711,28349471-28349557,28349640-28349784,
28350832-28350900,28351147-28351207,28351375-28351493,
28351659-28351713
Length = 192
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 147 VFVALDHVNDPTDYFFRNVENLSWF 73
VF DH D+FF++ EN+S+F
Sbjct: 52 VFSTKDHRQVKNDFFFKSAENISFF 76
>05_03_0510 +
14864430-14864792,14865234-14865485,14865573-14865671,
14865789-14866082,14866630-14867010
Length = 462
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 151 PTQALSNSIANASARKSAVHSMGSTRQPSLPESVAIAVPRPKSV 282
P ALS + A A+AR++A + S R+ + +VA VP P V
Sbjct: 6 PLAALSKAAAAAAARRAATVAARSRRRLLVLPAVASLVPGPPPV 49
>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
Length = 697
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +1
Query: 79 RKVLHIPEKIIGGVIDMVQSHKNKPTQALSNSIANASARKSAVHSMGSTRQPSLPESVAI 258
+ V+HI E + + +Q P L+ I+ S +HS +TR+ S P+ +
Sbjct: 390 KSVVHISEAWLD---ERMQMQNADPKATLAERISITERLSSEIHSFLNTRRSSKPKDDKL 446
Query: 259 AVPRPKSV*QLC 294
+ K LC
Sbjct: 447 YISNEKQDASLC 458
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 420 ESIPSAEPKLPRSGSKSVSRATEQFPEPKS---GPV-ARAEPVWSEPTLLCPRQGPFQNQ 587
E+ P+A P PRS S + + + P++ P A A P S R+ P Q +
Sbjct: 120 EARPAASPATPRSSSATKATLSRPRTTPRTTTPSPAGAAASPRLSSSNPDARRRAPPQPE 179
Query: 588 APYVGNNQNQLP 623
P +N++P
Sbjct: 180 PPSTPRKENRVP 191
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Frame = +3
Query: 90 PHSGKNNRWGH*HGPKPQKQANASLIKLNRKRKCKEISSTQHGLHPP----TKPTRVSRN 257
PH + P PQ+ A+ SL + +K + + H PP TK T +
Sbjct: 117 PHKSPSPPLAQRKSPSPQEAAHQSLASSDPPKKRRRLCKASHMSEPPPLKKTKKTPLPNR 176
Query: 258 RSSKAKISITI 290
K+ + +
Sbjct: 177 SEPSLKVPVEV 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,349,388
Number of Sequences: 37544
Number of extensions: 378857
Number of successful extensions: 1241
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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