Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0193
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10900| Best HMM Match : I-set (HMM E-Value=0) 35 0.050
SB_50382| Best HMM Match : RVT_1 (HMM E-Value=0.026) 30 1.9
SB_19140| Best HMM Match : Cyclotide (HMM E-Value=2.8) 29 2.5
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36) 29 3.3
SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8) 29 3.3
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_8927| Best HMM Match : UCH (HMM E-Value=0) 28 7.6
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11) 28 7.6
>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
Length = 1642
Score = 35.1 bits (77), Expect = 0.050
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +3
Query: 429 PSAEPKLPRSGSKSVSRATEQF----PEPKSGPVARAEPVWSEPTLLCPRQGPFQNQAPY 596
P + P +G +S EQ+ P P GP +P ++ P GPF+
Sbjct: 1530 PRTFEEYPENGGRSDCPEYEQYRSFEPHPDIGPETEKQPDNGPSSVAYPDDGPFREGPSA 1589
Query: 597 VGNNQNQLPVPTG 635
G N+N+ VP G
Sbjct: 1590 QGTNENKDNVPLG 1602
>SB_50382| Best HMM Match : RVT_1 (HMM E-Value=0.026)
Length = 1036
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/74 (22%), Positives = 32/74 (43%)
Frame = -3
Query: 365 AALVWNCWTNCSWVRSQWAQQDN*HNCYTDFGLGTAIATDSGRLGWRVEPMLCTADFLAL 186
A WN +T C+ + + Q+ + D+ ++++ LGW LC +A+
Sbjct: 898 ATSAWNPYTQCNINKIEMIQRRAARFVFNDYSRYSSVSPMINSLGWESLEQLCIISVVAV 957
Query: 185 AFAIEFDKACVGLF 144
A + K + LF
Sbjct: 958 VVA--YVKPSISLF 969
>SB_19140| Best HMM Match : Cyclotide (HMM E-Value=2.8)
Length = 168
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 236 LGWRVEPMLCTADFLALAFAIEFDKACVGLFLWL 135
LGW + +CTA L LA C GLF+ L
Sbjct: 128 LGWPCDEAVCTAHRLGLAMPAGAGAFCTGLFVHL 161
>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
Length = 885
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 141 QKQANASLIKLNRKRKCKE 197
Q++A A I+ NRKRKCKE
Sbjct: 608 QRKAQAKTIQENRKRKCKE 626
>SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)
Length = 651
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 141 QKQANASLIKLNRKRKCKE 197
Q++A A I+ NRKRKCKE
Sbjct: 561 QRKAQAKTIQENRKRKCKE 579
>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 447 LPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCPRQGPFQNQAPYVGNNQNQLP 623
+PRS S+ R+ ++ P+SG A+ P PR G P G++ + P
Sbjct: 446 VPRSSSQRTPRSAQR--TPRSGSSAQRTPRSGSSVQRTPRSGSLAQGTPKSGSSAQRTP 502
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Frame = +1
Query: 49 INTTTALLEPRKVLHIPEKII--GGVIDMVQSHK--NKPTQALSNSIANASARKSAVHSM 216
I T+ + P V P K G + Q+H + PT A + SIA V SM
Sbjct: 277 IPVATSKVPPSGVSSAPHKPAQPGLLAHFSQTHSPLHMPTSAAAGSIAQGGIVSGGVVSM 336
Query: 217 GSTRQPSLPESVAIAVPRPK 276
G + P V++A K
Sbjct: 337 GGQPPKAAPSPVSVAAVTSK 356
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 477 RATEQFPEPKSGPVARAEP--VWSEPTLLCPR--QGPFQNQAPYVGNNQNQLPVPTGQY 641
R + P P GP R P + + + PR QG Q PY G++ +++P P G Y
Sbjct: 311 RPPTRIPPPGMGPPPRIPPPPIRAPVDVYPPRAPQGASQTP-PYPGSHYSRVPPPDGPY 368
>SB_8927| Best HMM Match : UCH (HMM E-Value=0)
Length = 316
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 34 F*SYLINTTTALLEPRKVLHIPEKIIGGVIDMVQ-SHKNKPTQALSNSIANASARKSAVH 210
F +YL+NT LL+ + L+ +I ++ + K K + S SI++ + SA
Sbjct: 112 FLNYLLNTIADLLQGNEFLNYLSNMIAHLLQGEKVKEKEKEKHSSSGSISSKGSLSSA-S 170
Query: 211 SMGSTRQPSLPESVA 255
++GS P++P A
Sbjct: 171 TIGSI-TPAIPNGTA 184
>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
Length = 2297
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +3
Query: 471 VSRATEQFPEPKSGPVARAEPVWSEPTLLCPR----QGPFQNQAPYVGNNQNQLPV-PTG 635
+SR+TEQ PKS + RAE V P+ + + +GP + Q+Q P PT
Sbjct: 1635 MSRSTEQLDRPKSRSIDRAEKV--SPSFVFSKIPHVKGPLSTAERTEPSPQDQQPTSPTS 1692
Query: 636 Q 638
Q
Sbjct: 1693 Q 1693
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,848,935
Number of Sequences: 59808
Number of extensions: 423733
Number of successful extensions: 1391
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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