Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0193
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr... 32 0.41
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.8
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 3.8
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 3.8
U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormon... 28 6.7
U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormon... 28 6.7
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 28 6.7
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 28 6.7
AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear recep... 28 6.7
AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical ... 28 6.7
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ... 28 6.7
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 28 6.7
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 27 8.8
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 27 8.8
>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
F20C5.2b protein.
Length = 1130
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +3
Query: 138 PQKQANASLIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKIS 281
P+ + ++ + R K+ + LHPPT P+++S++ SS + ++
Sbjct: 1051 PRTRRKLISVRRLKDRNRKKFKCSMKRLHPPTSPSKISKSASSSSDLT 1098
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 429 PSAEPKLPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCP 563
PS++ P +GS + S+ + Q P P P + + P S + + P
Sbjct: 391 PSSQSPAPNTGSTTPSQTSSQSPSPSMNP-SSSTPTGSSQSTITP 434
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 429 PSAEPKLPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCP 563
PS++ P +GS + S+ + Q P P P + + P S + + P
Sbjct: 598 PSSQSPAPNTGSTTPSQTSSQSPSPSMNP-SSSTPTGSSQSTITP 641
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 429 PSAEPKLPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCP 563
PS++ P +GS + S+ + Q P P P + + P S + + P
Sbjct: 598 PSSQSPAPNTGSTTPSQTSSQSPSPSMNP-SSSTPTGSSQSTITP 641
>U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform b protein.
Length = 413
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 141 QKQANAS-LIKLNRKRKCKEISSTQHGLHP--PTKPTRVSRNRSSKAKIS 281
+K NA L + R +KC E+ T+ LHP RV N S + IS
Sbjct: 84 EKSVNAKRLCRSCRYQKCLEVGMTEDALHPCRDVIGRRVRNNSSDSSPIS 133
>U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform a protein.
Length = 429
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 141 QKQANAS-LIKLNRKRKCKEISSTQHGLHP--PTKPTRVSRNRSSKAKIS 281
+K NA L + R +KC E+ T+ LHP RV N S + IS
Sbjct: 84 EKSVNAKRLCRSCRYQKCLEVGMTEDALHPCRDVIGRRVRNNSSDSSPIS 133
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 574 GPCLGHSKVGSLHTGSALATGPDFGSGN 491
GP G+ G GS A G FGSGN
Sbjct: 65 GPRFGNGNAGGTGFGSGNAGGTGFGSGN 92
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 574 GPCLGHSKVGSLHTGSALATGPDFGSGN 491
GP G+ G GS A G FGSGN
Sbjct: 65 GPRFGNGNAGGTGFGSGNAGGTGFGSGN 92
>AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear receptor
NHR-105 protein.
Length = 429
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 141 QKQANAS-LIKLNRKRKCKEISSTQHGLHP--PTKPTRVSRNRSSKAKIS 281
+K NA L + R +KC E+ T+ LHP RV N S + IS
Sbjct: 84 EKSVNAKRLCRSCRYQKCLEVGMTEDALHPCRDVIGRRVRNNSSDSSPIS 133
>AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical
protein Y15E3A.4 protein.
Length = 469
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 10 WSPSRLSYF*SYLINTTTALLEPRKVLHIPEKIIGGVI-DMVQSHKNKPTQALSNSIA 180
+ P+ L + +N T + + LH+ KII GV D +Q K + N+IA
Sbjct: 273 YGPTFLKEVLGFAVNHTGYFVAVPRALHLAFKIISGVASDRIQFWSEKTKMRIFNTIA 330
>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
protein ZC132.5 protein.
Length = 1277
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 67 LLEPRKVLHIPEKIIGGVIDMVQSHKNKPTQALSNSIANASARKSAVHSMGSTRQ---PS 237
L + ++H P + G V+D + K TQ +N+I R++ H ++
Sbjct: 96 LQQQETIMHAPNEYTGAVVDEKLEMEKKTTQFFNNTI---EKRENGYHVRLPFKEEVIDK 152
Query: 238 LPESVAIAVPRPKS 279
LP + AIA R +S
Sbjct: 153 LPSNFAIAKKRLQS 166
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 574 GPCLGHSKVGSLHTGSALATGPDFGSGN 491
GP G+ G GS A G FGSGN
Sbjct: 65 GPRFGNGNAGGTGFGSGNAGGTGFGSGN 92
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 429 PSAEPKLPR-SGSKSVSRATEQFPEP--KSGPVARAEPVWSEP 548
P+ P +P SG+ S+ + Q P+ ++GP A A PV S+P
Sbjct: 402 PTIWPLMPTVSGADSLPGPSSQAPQQFRQNGPAATAAPVESQP 444
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 429 PSAEPKLPR-SGSKSVSRATEQFPEP--KSGPVARAEPVWSEP 548
P+ P +P SG+ S+ + Q P+ ++GP A A PV S+P
Sbjct: 599 PTIWPLMPTVSGADSLPGPSSQAPQQFRQNGPAATAAPVESQP 641
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,199,655
Number of Sequences: 27780
Number of extensions: 314481
Number of successful extensions: 1067
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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