Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0193
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   0.12 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.12 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   1.1  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    24   1.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   4.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 145 NKPTQALSNSIANASARKSAVHSMGSTRQPSLPESVAIAVPRPKS 279
           N    AL+   A+ASA + +VHSM     P L       +PRPKS
Sbjct: 598 NAVVNALAEQAAHASASEESVHSMELRTLPCL-------LPRPKS 635


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 145 NKPTQALSNSIANASARKSAVHSMGSTRQPSLPESVAIAVPRPKS 279
           N    AL+   A+ASA + +VHSM     P L       +PRPKS
Sbjct: 566 NAVVNALAEQAAHASASEESVHSMELRTLPCL-------LPRPKS 603


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 219 LHPPTKPTRVSRNRSSKAK 275
           L PPT+PTR+ R    +A+
Sbjct: 22  LDPPTRPTRLRREAKPEAE 40


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 219 LHPPTKPTRVSRNRSSKAK 275
           L PPT+PTR+ R    +A+
Sbjct: 23  LDPPTRPTRLRREAEPEAE 41


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 258 RSSKAKISITIMLIILLCPLGTYPATVSPT 347
           R+S  +++I ++  +L+C L T+    +PT
Sbjct: 547 RASGRELTIILLAGVLVCYLNTFLLLATPT 576


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 258 RSSKAKISITIMLIILLCPLGTYPATVSPT 347
           R+S  +++I ++  +L+C L T+    +PT
Sbjct: 637 RASGRELTIILLAGVLVCYLNTFLLLATPT 666


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 219 LHPPTKPTRVSRNRSSKAK 275
           L PPT+P R+ R    +A+
Sbjct: 23  LDPPTRPARLRREAKPEAE 41


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 48  NQHNDSAVGTTKGSPH 95
           +QH +  +G T G PH
Sbjct: 336 HQHGNHTMGPTMGPPH 351


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 425 NSKRRTQITTVRLKISFKGNRTISRTKIR 511
           N KR+ + +T+  +   + N + ++TK+R
Sbjct: 213 NGKRKRKSSTIENESETESNASSTKTKMR 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,190
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)