Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0193
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39740.1 68415.m04880 expressed protein                             32   0.38 
At4g28485.1 68417.m04075 hypothetical protein contains Pfam prof...    30   1.2  
At4g34060.1 68417.m04833 expressed protein similar to DEMETER pr...    30   1.5  
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul...    30   1.5  
At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ...    29   2.0  
At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ...    29   2.0  
At2g34300.1 68415.m04196 dehydration-responsive protein-related ...    29   2.0  
At1g54385.1 68414.m06201 expressed protein ; expression supporte...    29   2.0  
At1g06770.2 68414.m00719 zinc finger (C3HC4-type RING finger) fa...    29   2.7  
At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger) fa...    29   2.7  
At4g01810.1 68417.m00238 protein transport protein-related relat...    28   4.7  
At3g13060.2 68416.m01628 expressed protein contains Pfam profile...    28   4.7  
At3g13060.1 68416.m01627 expressed protein contains Pfam profile...    28   4.7  
At1g70180.2 68414.m08076 sterile alpha motif (SAM) domain-contai...    28   6.2  
At1g70180.1 68414.m08075 sterile alpha motif (SAM) domain-contai...    28   6.2  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    28   6.2  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    27   8.2  

>At2g39740.1 68415.m04880 expressed protein
          Length = 474

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +2

Query: 314 TGNVPSYS*SNNSKPGQLWWVSNPRTVSKLRPTIRGINSKRRTQITTVRLKISFKGNRTI 493
           T N P +     S+P Q W  +NPR +   +P ++G      TQ  T +      GNR +
Sbjct: 358 TPNPPHWPPLTQSRPQQNWTQNNPRNLQG-QPPVQGQTWPVITQTQTQQKSPYKSGNRPL 416

Query: 494 SRTKIRSS 517
             T   SS
Sbjct: 417 KNTSAGSS 424


>At4g28485.1 68417.m04075 hypothetical protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679)
          Length = 165

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/61 (26%), Positives = 23/61 (37%)
 Frame = +3

Query: 420 ESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCPRQGPFQNQAPYV 599
           +S+ ++ P  PR     V R     P P +G  A + P    P    P   P + Q    
Sbjct: 6   QSLIASLPSAPRKPKSKVERVVSVPPSPVAGSPASSSPYAPSPASSSPLPTPLETQTARY 65

Query: 600 G 602
           G
Sbjct: 66  G 66


>At4g34060.1 68417.m04833 expressed protein similar to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; expression
           supported by MPSS
          Length = 1073

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +3

Query: 78  TKGSPHSGKNNRWGH*H-GPKPQKQANASLIKLNRKRKCKEISSTQH---GLHPPTKPTR 245
           +KG+P   + NR      G KP+  A   L  ++ KR+ K+I S       L  PTK + 
Sbjct: 92  SKGTPKKLRFNRPRILEDGKKPRNPATTRLRTISNKRRKKDIDSEDEVIPELATPTKESF 151

Query: 246 VSRNRSSKAKISI 284
             R ++ K K S+
Sbjct: 152 PKRRKNEKIKRSV 164


>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
           regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
           phosphatases pleiotropic regulator PRL2 {Arabidopsis
           thaliana}, GB:Q39190 from [Arabidopsis thaliana];
           contains Pfam PF00400: WD domain, G-beta repeat (7
           copies, 1 weak)
          Length = 479

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 126 HGPKPQKQANASLIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSK 269
           HG  PQ    +  I+L     C +I     G+ P +KPTR++ + S K
Sbjct: 34  HGQFPQPDPESKRIRL-----CHKIQVAFGGVEPASKPTRIADHNSEK 76


>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 374 PTIAALVWNCWTNCSWVRSQWA 309
           P +AA++  CWTN  W R  +A
Sbjct: 778 PQVAAIIEGCWTNEPWKRPSFA 799


>At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 374 PTIAALVWNCWTNCSWVRSQWA 309
           P +AA++  CWTN  W R  +A
Sbjct: 778 PQVAAIIEGCWTNEPWKRPSFA 799


>At2g34300.1 68415.m04196 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 234 KPTRVSRNRSSKAKISITIMLIILLCPLGTY 326
           K +RV   +SS   ++ITI+L++ LC +GT+
Sbjct: 5   KYSRVDGKKSSSYGLTITIVLLLSLCLVGTW 35


>At1g54385.1 68414.m06201 expressed protein ; expression supported
           by MPSS
          Length = 560

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 541 LHTGSALATGPDFGSGNCS-VALETDFEPDRGNLGSALGIDSP 416
           +  G    TG +F   NCS +  +    P+   LGS  G DSP
Sbjct: 300 MEKGCRSVTGSNFSRRNCSSIVPDYSLSPESQTLGSFSGYDSP 342


>At1g06770.2 68414.m00719 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 307

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 81  KGSPHSGKNNRWGH*HGPKPQKQANASLIKLNRKRKCKEISSTQHGLHPPTKPT-RVSRN 257
           K S   G  ++  H +  + Q Q + +  K N+KRKCK      +   P T  T    R 
Sbjct: 104 KSSASQGSGSKSEHANVSRNQFQGSKTKTK-NKKRKCKREDDKSNNGDPTTSETVTPKRM 162

Query: 258 RSSKAKISITIM 293
           R+++ K S T +
Sbjct: 163 RTTQRKRSATTL 174


>At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 421

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 81  KGSPHSGKNNRWGH*HGPKPQKQANASLIKLNRKRKCKEISSTQHGLHPPTKPT-RVSRN 257
           K S   G  ++  H +  + Q Q + +  K N+KRKCK      +   P T  T    R 
Sbjct: 218 KSSASQGSGSKSEHANVSRNQFQGSKTKTK-NKKRKCKREDDKSNNGDPTTSETVTPKRM 276

Query: 258 RSSKAKISITIM 293
           R+++ K S T +
Sbjct: 277 RTTQRKRSATTL 288


>At4g01810.1 68417.m00238 protein transport protein-related related
           to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
          Length = 880

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 429 PSAEPK---LPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCPRQG 572
           PS +P    +P S     S    +FP+P   P   + P    P+LL P  G
Sbjct: 23  PSPQPDRTPVPHSPPVVASPIPPRFPQPSFRPDQMSSPSMKSPSLLSPANG 73


>At3g13060.2 68416.m01628 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 634

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 495 PEPKSGPVA-RAEPVWSEPTLLCPRQGPFQNQAPYVGNNQNQLPVPTGQYGT 647
           P+   GP +  A P+ SE  L  P+Q PF   +PY      Q+  P+ QY T
Sbjct: 130 PQMPYGPYSPAASPLPSEGQLYSPQQFPFSGASPY----YQQVVPPSMQYIT 177


>At3g13060.1 68416.m01627 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 551

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 495 PEPKSGPVA-RAEPVWSEPTLLCPRQGPFQNQAPYVGNNQNQLPVPTGQYGT 647
           P+   GP +  A P+ SE  L  P+Q PF   +PY      Q+  P+ QY T
Sbjct: 130 PQMPYGPYSPAASPLPSEGQLYSPQQFPFSGASPY----YQQVVPPSMQYIT 177


>At1g70180.2 68414.m08076 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 460

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 438 EPKLPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCPRQGPFQNQAP 593
           EP  PR+G + +  A ++ P    G +  +    S P     R GP ++Q+P
Sbjct: 192 EPSPPRNGRRMIGSARDRSPPRSDGRIIGSPRDISPPRDAGRRFGPPRDQSP 243


>At1g70180.1 68414.m08075 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 456

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 438 EPKLPRSGSKSVSRATEQFPEPKSGPVARAEPVWSEPTLLCPRQGPFQNQAP 593
           EP  PR+G + +  A ++ P    G +  +    S P     R GP ++Q+P
Sbjct: 192 EPSPPRNGRRMIGSARDRSPPRSDGRIIGSPRDISPPRDAGRRFGPPRDQSP 243


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 498 EPKSGPVARAEPVWSEPTLLCPRQGPFQNQAPYVGNNQNQLPVPTGQ 638
           EP   P   +   +  P L  P Q P   QAP   +  +Q+P P+ +
Sbjct: 698 EPTQVPTPSSSESYQAPNL-SPVQAPTPVQAPTTSSETSQVPTPSSE 743


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 346 QFQTRAAMV-GLKPKDSFKTSPNNQGNQFQAQNPNY 450
           Q QTR+  V  LKP D+F    N+     QAQ  NY
Sbjct: 67  QHQTRSISVDALKPSDTFPRRHNSATPDEQAQMANY 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,576,139
Number of Sequences: 28952
Number of extensions: 295735
Number of successful extensions: 913
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)