Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0189
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   1.6  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.7  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   4.8  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   4.8  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.5  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    25   8.5  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   8.5  

>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 336 HLQTPEWFKYNEQGSHRKASXEWFGG 413
           HL +    KYN   +HR AS  W+ G
Sbjct: 141 HLSSSSLSKYNHHSNHRLASPGWWYG 166


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 98  NMDTYRKIWPELATL 142
           N+DT R++WPEL  +
Sbjct: 469 NLDTIRRLWPELGRM 483


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -3

Query: 431 FPWGAHTSKPFXRSLSMRSLLI-VLEPFRSL*VTSRLF---HPSCII 303
           F W  HT++PF  ++ ++ LL   ++ F++L    R+    H S ++
Sbjct: 33  FTWDHHTARPFWTAIKVQPLLANEVQTFKALITIHRVLQEGHKSALV 79


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 298 RXIIQEGWNKREVTYR-LLNGSSTMSKDRIERLLXNGLEVW 417
           R  + + W   E+  R  ++ SST   + +E+   NGLE W
Sbjct: 484 RGALVKPWIFEEIEARQFIDKSSTQRLEMLEQYCNNGLEYW 524


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -3

Query: 338 VTSRLFHPSCIIXLRFLACESSSISFKPHLFLLNNCLVGTSS-TPVCGSPAKACIF---L 171
           +T++ FH  CI+ L+      S+   KP +F  +  +      T +C SPA+ C+F   L
Sbjct: 412 ITAKSFH-KCILLLK---TGFSAPLIKPSVFSGSKWVENMRLLTDLCKSPAQKCLFSNLL 467

Query: 170 TASEIDC 150
           TA+   C
Sbjct: 468 TATRKFC 474


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 71  RLTRLIFCYNMDTYRKIWPELATLTRHNLFPKLS 172
           R  R +FC  MD+ +K+   L T T + + P  S
Sbjct: 174 RCYRSLFCKKMDSLKKLVSFLLTETENAILPPKS 207


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 474 VYFASGNHGDGFPFDGPGRVVAPPFHRPSGIY 569
           V  + G+H    P++    +V  PFH  SG+Y
Sbjct: 121 VALSPGSHAIN-PYNNASMLVNEPFHDDSGVY 151


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 289 RNRRXIIQEGWNKREVTYRLLNGSSTMSKDRIE----RLLXNGLE 411
           RN+  ++ +   K+E   R  +GSS  S   ++    +LL +GLE
Sbjct: 272 RNKSVLVYDLRTKKECVQRFYHGSSICSMQNLDFSQPKLLVSGLE 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,951
Number of Sequences: 5004
Number of extensions: 56081
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)