Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0189
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0900 - 21436508-21437521                                         41   7e-04
02_05_0697 - 30999644-31000762                                         36   0.033
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452...    33   0.13 
06_01_0940 + 7235801-7236916                                           33   0.17 
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419...    29   2.8  
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160...    27   8.7  
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729...    27   8.7  

>10_08_0900 - 21436508-21437521
          Length = 337

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +3

Query: 468 IQVYFASGNHGDGFPFDGPGRVVAPPFHRPSGIYILMMTKTWGV 599
           I+V F +GNHGDG PFDGP  ++   F   +G   L  ++ W V
Sbjct: 189 IKVGFYAGNHGDGVPFDGPLGILGHAFSPKNGRLHLDASEHWAV 232


>02_05_0697 - 30999644-31000762
          Length = 372

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 468 IQVYFASGNHGDGFPFDGPGRVVAPPFHRPSGIYILMMTKTW 593
           I + F SG+HGDG  FDGP   +A  F    G + L   + W
Sbjct: 214 ITIGFYSGDHGDGEAFDGPLGTLAHAFSPTDGRFHLDAAEAW 255


>10_08_0901 -
           21443224-21444085,21444804-21444998,21445189-21445259,
           21446293-21447094,21447687-21447723,21448270-21449023
          Length = 906

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 477 YFASGNHGDGFPFDGPGRVVA 539
           ++ +G HGDG PFDGP  V A
Sbjct: 123 FYGAGEHGDGHPFDGPLNVYA 143


>06_01_0940 + 7235801-7236916
          Length = 371

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 468 IQVYFASGNHGDGFPFDGPGRVVAPPFHRPSGIYILMMTKTW 593
           I + F  G+HGDG  FDGP   +A  F   +G   L  ++ W
Sbjct: 214 ITIGFYGGDHGDGEAFDGPLGTLAHAFSPTNGRLHLDASEAW 255



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +1

Query: 85  NFLLQYGYLS----KDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKR 252
           ++L  +GYLS      L+          +  A+K  Q   GL  TG LD  T       R
Sbjct: 67  DYLWHFGYLSYPSSSSLSPSFNDLFDADMELAIKMYQGNFGLDVTGDLDAATVSQMMAPR 126

Query: 253 CGLKDI 270
           CG+ D+
Sbjct: 127 CGVADV 132


>02_03_0381 -
           18339290-18339994,18340083-18340103,18341925-18341982,
           18342084-18342220,18342480-18342650
          Length = 363

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 486 SGNHGDGFPFDGPGRVVAPPFHRPS 560
           SGN+G G+P      +  PP H PS
Sbjct: 142 SGNYGSGYPPPHQHHMAPPPIHTPS 166


>10_01_0132 -
           1601421-1601657,1601761-1601922,1602812-1603721,
           1604587-1604651,1604704-1604746,1605086-1605128,
           1605874-1605955,1606270-1606464,1606567-1606721,
           1611207-1611435,1611538-1611693,1612539-1613476,
           1614946-1614967
          Length = 1078

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 43  TIYLELNSPTLDEVNFLLQYGYLSKDLAG 129
           T++L+ NSP L+++   +  GY +KD+ G
Sbjct: 354 TVFLQ-NSPKLEKLRLEIDEGYTAKDIKG 381


>02_05_0226 +
           26971851-26972034,26972734-26972834,26972876-26972978,
           26973335-26973477,26973525-26973605,26973929-26974015,
           26974097-26974239,26974746-26974896,26974973-26975095,
           26975362-26975445,26975531-26975718,26976726-26976900,
           26977008-26977129,26977231-26977310,26977532-26977590,
           26977921-26978075,26978680-26978858,26980050-26980162,
           26980243-26980413,26980552-26980680,26980756-26980856,
           26980942-26981059,26981739-26981818,26983230-26983302,
           26983865-26983950,26984025-26984076,26984221-26984352,
           26984560-26984628,26984912-26985004,26985806-26985901,
           26986710-26986808,26986894-26986986,26987459-26987608,
           26988391-26988549
          Length = 1323

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 31  VQCRTIYLELNSPTLD---EVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAF 189
           V C+ +Y EL + TL    +VNF+L    L K+       +  ++ISEA+K++  F
Sbjct: 148 VGCKLVY-ELFTDTLTSRLKVNFVLGACILKKERKKKWDEHNQEAISEALKQLNEF 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,545,783
Number of Sequences: 37544
Number of extensions: 408969
Number of successful extensions: 955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)