Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0189
(601 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0) 83 1e-16
SB_50601| Best HMM Match : Peptidase_M10 (HMM E-Value=0) 77 1e-14
SB_10017| Best HMM Match : Peptidase_M10_N (HMM E-Value=1.7e-15) 75 4e-14
SB_16343| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_33023| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_33582| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_40904| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 4e-11
SB_31720| Best HMM Match : Peptidase_M10 (HMM E-Value=1e-30) 50 1e-06
SB_50598| Best HMM Match : Peptidase_M10_N (HMM E-Value=2.9e-08) 49 3e-06
SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0) 46 2e-05
SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31) 38 0.006
SB_2942| Best HMM Match : Peptidase_M10_N (HMM E-Value=0.69) 36 0.025
SB_55442| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_31942| Best HMM Match : TolA (HMM E-Value=0.36) 29 2.9
SB_17010| Best HMM Match : Peptidase_M10 (HMM E-Value=6.2e-27) 29 3.8
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 28 5.0
SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05) 28 5.0
SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09) 27 8.8
SB_42814| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.4e-09) 27 8.8
SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6) 27 8.8
>SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
Length = 556
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Frame = +1
Query: 85 NFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLK 264
++L +YGYL G + Q +S A+++ Q + GL +TG++D TK ++ RCGL
Sbjct: 7 DYLTRYGYLDAPNRKTGAIRSRQDLSRAIRQFQRYTGLQETGIMDAATKSKMEQPRCGLP 66
Query: 265 DI-DEDSHARNRRXIIQEG--WNKREVTYRLLNGSSTMSKDRIERLLXNGLEVWAPHGNL 435
DI +AR +R +G W K E+TYR + + +S+ + R+ ++W+ L
Sbjct: 67 DIVGTSENARRKRRYALQGSRWEKSEITYRFASYGNDLSRTAVRRIFARAAKLWSDKMQL 126
Query: 436 HFTKLDEGKAAY 471
+ + + KA +
Sbjct: 127 NIKETSDAKADF 138
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 438 LHETR*RQSGIQVYFASGNHGDGFPFDGPGRVVAPPF 548
+ ET ++ V F S +HGDG PFDGPG +A F
Sbjct: 128 IKETSDAKADFTVSFNSYDHGDGDPFDGPGGTLAHAF 164
>SB_50601| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
Length = 515
Score = 76.6 bits (180), Expect = 1e-14
Identities = 42/129 (32%), Positives = 70/129 (54%)
Frame = +1
Query: 82 VNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGL 261
+ +L Q+ Y+S +G + ++ A++K Q+FAGLP TG +D T K RCG+
Sbjct: 127 LKYLNQFHYISPARSG------NHNVKTALEKFQSFAGLPVTGEIDAATIAQMKMPRCGM 180
Query: 262 KDIDEDSHARNRRXIIQEGWNKREVTYRLLNGSSTMSKDRIERLLXNGLEVWAPHGNLHF 441
D+D+D R RR + WNK+ +TY + +G +S +R+ L+ WA L F
Sbjct: 181 PDVDDDG-LRIRRYKLGSKWNKKHLTYHISHGQD-LSSSVQDRVFAKALDYWARVSGLTF 238
Query: 442 TKLDEGKAA 468
++ +G+ A
Sbjct: 239 SRTMDGENA 247
>SB_10017| Best HMM Match : Peptidase_M10_N (HMM E-Value=1.7e-15)
Length = 152
Score = 74.9 bits (176), Expect = 4e-14
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +1
Query: 85 NFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLK 264
+FL +Y Y+S+ +G + + A+K Q F GLP +G LD T L ++ RCG+
Sbjct: 28 DFLSRYNYISQTRSG------NHDFTTAIKNFQTFFGLPLSGELDQATVALMRKPRCGMP 81
Query: 265 DIDEDSHARNRRXIIQEGWNKREVTYRLLNGS--STMSKDRIERLLXNGLEVWAPHGNLH 438
D+D DS R RR ++ W+K+ +TY + G+ S +D I RL L+ WA L
Sbjct: 82 DVD-DSGLRVRRYNARDPWSKKSLTYYIEYGADLSASEQDDIFRL---ALKFWADESGLS 137
Query: 439 FTKLDEGKAA 468
F ++ G AA
Sbjct: 138 FRQVKSGTAA 147
>SB_16343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 449
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Frame = +1
Query: 85 NFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLK 264
NFL +YGYL G+ T + +++A++ +Q FAGL +TGV+D T + RCG+
Sbjct: 1 NFLTKYGYLVPKDPRQGHLRTREELTKAIRMLQRFAGLNETGVMDAATIAQMGKSRCGMP 60
Query: 265 DIDEDSHARNRRXIIQEG--WNKREVTYRLLNGSSTMSKDRIERLLXNGLEVW 417
D AR ++ G W K ++TYR+ +S + K ER+ W
Sbjct: 61 DFSPADKARRKKRYQLHGTFWKKNDLTYRIKGYTSDLPKSDQERIYKWAFAQW 113
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 468 IQVYFASGNHGDGFPFDGPGRVVAPPF--HRPSGI 566
I + F G HGDG+PFDGPG +A F H GI
Sbjct: 135 ILIDFVRGYHGDGYPFDGPGGTLAHAFYPHNNEGI 169
>SB_33023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 68.9 bits (161), Expect = 3e-12
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Frame = +1
Query: 82 VNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVP-TKQLFKRKRCG 258
V++L +YGYLS G T + + A+K +Q F G TG ++ P L R RCG
Sbjct: 40 VDYLTKYGYLSPIDPRNGKIRTDKELKTAIKTLQRFGGFKATGDIEDPHLVDLLNRSRCG 99
Query: 259 LKDI-DEDSHARNRRXIIQ-EGWNKREVTYRLLNGSSTMSKDRIERLLXNGLEVWAPHGN 432
+ D+ D + R RR ++Q W + YR+ N + + ++ ++ + N L +WA
Sbjct: 100 MPDVGPADVYKRKRRYLLQGSTWRTTTLKYRIENYTPDLPREEVDNAIRNALAMWAAVTP 159
Query: 433 LHFTKL 450
L F ++
Sbjct: 160 LTFIEV 165
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3
Query: 468 IQVYFASGNHGDGFPFDGPGRVVAPPFH 551
I++ F +G+HGDG+PFDGPG +A F+
Sbjct: 174 IRIRFVTGDHGDGYPFDGPGGTLAHAFY 201
>SB_33582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 68.5 bits (160), Expect = 4e-12
Identities = 45/140 (32%), Positives = 66/140 (47%)
Frame = +1
Query: 88 FLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKD 267
+L QY Y+S +G +Q + A+K Q FAGL TG LD T K RCG D
Sbjct: 210 YLNQYNYISNSRSG------NQDVETAIKNFQRFAGLEVTGELDDATIAQMKMPRCGDAD 263
Query: 268 IDEDSHARNRRXIIQEGWNKREVTYRLLNGSSTMSKDRIERLLXNGLEVWAPHGNLHFTK 447
+D D+ R RR + WNK +TY L G + + +R+ L+ W+ L F++
Sbjct: 264 VD-DNGDRVRRYKLGSKWNKNALTYHLSYGKDLPNSVQ-DRVFEKALKFWSDGSALSFSR 321
Query: 448 LDEGKAAYKFISLPATMETG 507
+ + A IS + G
Sbjct: 322 VSDVSKADLKISFGSRSHNG 341
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 465 GIQVYFASGNHGDGFPFDGPGRVVAPPFHRPSG 563
G + + G G PFDGPGRV+A + +G
Sbjct: 335 GSRSHNGPGESRCGSPFDGPGRVLAHAYFPSNG 367
>SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 65.7 bits (153), Expect = 3e-11
Identities = 41/135 (30%), Positives = 63/135 (46%)
Frame = +1
Query: 43 TIYLELNSPTLDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDV 222
T + ++N +L + Y+S +G + A+K Q FAGL TG LD
Sbjct: 337 TRHNDMNMRRATRAIYLNHFNYISNTRSG------NHDGKTAIKNFQRFAGLKVTGDLDE 390
Query: 223 PTKQLFKRKRCGLKDIDEDSHARNRRXIIQEGWNKREVTYRLLNGSSTMSKDRIERLLXN 402
PT + K+ RCG D+D D R RR ++ W K +TY L G + + +R+
Sbjct: 391 PTVRQMKKPRCGDPDVD-DKGKRRRRYLLASKWRKNALTYHLSYGKDLPNFVQ-DRVFEK 448
Query: 403 GLEVWAPHGNLHFTK 447
L+ WA L F++
Sbjct: 449 ALQFWADVSKLSFSR 463
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 507 FPFDGPGRVVAPPFHRPSG 563
+PFDG G+V+A F+ P+G
Sbjct: 491 YPFDGRGKVLAHAFYPPNG 509
>SB_40904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 65.3 bits (152), Expect = 4e-11
Identities = 44/143 (30%), Positives = 70/143 (48%)
Frame = +1
Query: 88 FLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKD 267
+L Q+ Y+S +G + + A++K Q+FAGLP TG +D T K RCG+ D
Sbjct: 37 YLNQFHYISPARSG------NHDVKTALEKFQSFAGLPVTGEIDASTIAQMKMPRCGMPD 90
Query: 268 IDEDSHARNRRXIIQEGWNKREVTYRLLNGSSTMSKDRIERLLXNGLEVWAPHGNLHFTK 447
+D D+ R RR W K+ +TY + +GS + K + + L+ WA L F++
Sbjct: 91 VD-DNGLRIRRYKRGPKWMKKHLTYHISHGSD-LPKPVQDGVFAKALDYWARVSGLSFSR 148
Query: 448 LDEGKAAYKFISLPATMETGSPS 516
+ + A IS +G S
Sbjct: 149 TMDFQNADLRISFGYKSHSGCAS 171
>SB_31720| Best HMM Match : Peptidase_M10 (HMM E-Value=1e-30)
Length = 284
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/66 (36%), Positives = 38/66 (57%)
Frame = +1
Query: 82 VNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGL 261
+ +L Q+ Y+S +G + + A++K Q+FAGLP TG +D T K RCG+
Sbjct: 80 LKYLNQFHYISPSRSG------NHDVKTALEKFQSFAGLPVTGEIDAATIAQMKMPRCGM 133
Query: 262 KDIDED 279
D+D+D
Sbjct: 134 PDVDDD 139
>SB_50598| Best HMM Match : Peptidase_M10_N (HMM E-Value=2.9e-08)
Length = 115
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = +1
Query: 70 TLDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRK 249
T+ +L +Y YL+ G + + A+K+MQ FA +PQTGV+D T +L
Sbjct: 43 TVTPQKYLNKYRYLAPSYERGG----NHDFTSAIKQMQRFAHIPQTGVVDAATFRLMHTP 98
Query: 250 RCGLKDIDEDSHARNRR 300
RCG+ D + R RR
Sbjct: 99 RCGMPDKSQGKSNRARR 115
>SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/66 (36%), Positives = 38/66 (57%)
Frame = +1
Query: 82 VNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGL 261
+ +L Q+ Y+S +G + + A++K Q+FAGLP TG +D T K RCG+
Sbjct: 624 LKYLNQFHYISPARSG------NHDVKTALEKFQSFAGLPVTGEIDAATIAQMKIPRCGM 677
Query: 262 KDIDED 279
D+D+D
Sbjct: 678 PDVDDD 683
>SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
Length = 684
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/70 (35%), Positives = 37/70 (52%)
Frame = +1
Query: 88 FLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKD 267
+L +Y YL+ G + + A+K+MQ FA +PQTGV+D T +L RCG+ D
Sbjct: 29 YLNKYRYLAPSYERGG----NHDFTSAIKQMQRFAHIPQTGVVDAATFRLMHTPRCGMPD 84
Query: 268 IDEDSHARNR 297
+ R R
Sbjct: 85 KSQGKSNRAR 94
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/70 (35%), Positives = 37/70 (52%)
Frame = +1
Query: 88 FLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKD 267
+L +Y YL+ G + + A+K+MQ FA +PQTGV+D T +L RCG+ D
Sbjct: 253 YLNKYRYLAPSYERGG----NHDFTSAIKQMQRFAHIPQTGVVDAATFRLMHTPRCGMPD 308
Query: 268 IDEDSHARNR 297
+ R R
Sbjct: 309 KSQGKSNRAR 318
>SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)
Length = 273
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 166 AVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKDIDEDSHARNRRXII 309
A++ Q + LP TG LD + + +KRCG DI+ED R I
Sbjct: 71 AIELFQRYMHLPVTGQLDEASIKKMHQKRCGFPDIEEDEDTRTHSNCI 118
>SB_2942| Best HMM Match : Peptidase_M10_N (HMM E-Value=0.69)
Length = 123
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 160 SEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKDI 270
+EA+ K Q F GL TG LD T + + K+CG KD+
Sbjct: 5 TEAINKYQEFMGLKVTGRLDDATLKEMQEKQCGNKDM 41
>SB_55442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +1
Query: 304 IIQEGWNKREVTYRLLNGSSTMSKDRIERLLXNGLEVWAPHGNLHFTKLDEGKAAYKFIS 483
+ W+KR +TY + G + KD R+ L+ W+ L F+ + G +A IS
Sbjct: 27 LTSSSWDKRHLTYHITYGRD-LDKDSQRRIFARALQYWSDVSGLSFSPTNNGGSADIKIS 85
Query: 484 LPATMETG 507
A G
Sbjct: 86 FGARSHGG 93
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 465 GIQVYFASGNHGDGFPFDGPGRVVAP-PFHRPSGIYILM 578
GIQV + S + G G G GR V F P+ Y+LM
Sbjct: 184 GIQVLYGSNSGGGGGGGGGGGRQVTEIHFRNPNSTYLLM 222
>SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 459 QSGIQVYFASGNHGDGFPFDGPGRVVAPPFHRPSG 563
++ I + F +G HGD FDGPG +A F+ G
Sbjct: 274 RADITIRFVTGYHGDSKSFDGPGNELAHAFYPQYG 308
>SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 468 IQVYFASGNHGDGFP-FDGPGRVVAPPFHRPSG 563
I++ F + HG+ FDGPG+V+A ++ G
Sbjct: 880 IKILFGTNTHGNCLKAFDGPGKVIAHAYYPSDG 912
>SB_31942| Best HMM Match : TolA (HMM E-Value=0.36)
Length = 589
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +1
Query: 148 SQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKDIDEDSHARNRRXIIQEGWNK 327
SQ ++ A + ++ +G Q GVL++ ++ + D HAR R Q N
Sbjct: 401 SQGLNMATEALRLASGEHQ-GVLNIHASATILKRESDMSPYTSDYHARTRLNATQTATNN 459
Query: 328 REVTYRLLNGSSTMS 372
++ ST+S
Sbjct: 460 KQAIDACAKNYSTLS 474
>SB_17010| Best HMM Match : Peptidase_M10 (HMM E-Value=6.2e-27)
Length = 107
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 507 FPFDGPGRVVAPPFHRPSG 563
+PFDGPG ++A F P+G
Sbjct: 19 YPFDGPGGILAHAFFPPNG 37
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 468 IQVYFASGNHGDGFPFDGPGRV-VAPPFHR 554
+Q F SGN GD F D G++ VA P R
Sbjct: 509 LQYSFVSGNLGDAFCIDSSGQITVAQPLDR 538
>SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05)
Length = 549
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 63 LPYA*RG*FFATIWILIERFGRSWLHLHVTI 155
+PYA + +W+L+++FGR +H+ V +
Sbjct: 299 IPYATQVVLIPIVWVLMQKFGRRPIHVTVLL 329
>SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 587 FGHHQNVNPRGAVERGG 537
F +H+ V PRG V+RGG
Sbjct: 387 FENHRRVKPRGVVKRGG 403
>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
Length = 1396
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 587 FGHHQNVNPRGAVERGG 537
F +H+ V PRG V+RGG
Sbjct: 455 FENHRRVKPRGVVKRGG 471
>SB_42814| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.4e-09)
Length = 924
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 587 FGHHQNVNPRGAVERGG 537
F +H+ V PRG V+RGG
Sbjct: 68 FENHRRVKPRGVVKRGG 84
>SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)
Length = 550
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 256 GLKDIDEDSHARNRRXIIQEGWNKREVTY-RLLNGSSTMSKDRIERL 393
G+ D+DED H R+R ++ W E T R+L +DRI++L
Sbjct: 236 GMIDMDEDKHPRHRPRYSEQAWLPVERTADRMLRS----IQDRIKKL 278
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,843,994
Number of Sequences: 59808
Number of extensions: 458191
Number of successful extensions: 1086
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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