Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0189
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +1

Query: 121 LAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRC---GLKDIDED 279
           L     T T  +   AV           TG   +PT++L KR++    G  D D+D
Sbjct: 228 LPAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRRLRKRRQNDGEGADDRDDD 283



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 131 LATLTRHNLFPKLSRKCRPSQGYHKQ 208
           L     H L+P  S  C P  G  +Q
Sbjct: 63  LTAQAHHRLYPAFSSSCDPVPGNLEQ 88


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 185 ACIFLTASEIDC 150
           AC+ L AS IDC
Sbjct: 10  ACLLLAASPIDC 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,326
Number of Sequences: 438
Number of extensions: 3959
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)