Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0188
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   2.2  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   2.9  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.8  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    24   9.0  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    24   9.0  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   9.0  

>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 263 PWTSAMSGAEPSRCLSLNTLHKSRLKKDMSMRSGNTVE 150
           PW    S  +   CLSL T   SRLK+ +S  +  +VE
Sbjct: 493 PWQELRSTKDKDYCLSLET--NSRLKQQLSSITLPSVE 528


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 241 PDIAEVHG*RNHSPSGGPRARLPTSAIKKKNSRGGPVPNSPYSE 372
           P  A  H   +H P+      +PTSA     +  G V N  YS+
Sbjct: 124 PSTANAHANAHHQPAQTTTTSIPTSATDNYTTVNGNV-NQSYSK 166


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 267 SPMDFSNVRGRAKPLP 220
           SP D  NVR RAK +P
Sbjct: 216 SPSDGQNVRSRAKKIP 231


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 215 VIGSGLALPLTLLKSMGDVTTHHQV 289
           + G  +  PL LLKS  D + HH V
Sbjct: 314 IYGENIWNPLDLLKSFLDHSNHHGV 338


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 300 SSAYKRNKKKKLEGGPGTQF 359
           S   ++N+KKK   GP  QF
Sbjct: 37  SKKKRKNRKKKKNNGPSEQF 56


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 94   ILQQNNFNHLIIRLWNELPSTVFPE 168
            ++ +   NHL++ LW+++ +  F E
Sbjct: 1266 LISKFKLNHLVLELWSDVLTYAFNE 1290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,323
Number of Sequences: 5004
Number of extensions: 34762
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)