Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0188
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0358 + 16176373-16176534,16176628-16176739,16176967-161771... 30 0.52
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 28 2.7
02_01_0370 + 2659704-2660012,2660318-2660488,2660981-2661058,266... 27 3.6
04_04_0489 + 25600543-25601368,25601441-25602282 27 4.8
03_05_0038 + 20121924-20122080,20123182-20123843 27 4.8
01_05_0604 - 23583244-23584989 27 4.8
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 27 6.3
03_05_0545 + 25419031-25420758 27 6.3
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 27 6.3
08_02_0101 + 12374476-12376683 26 8.4
>08_02_0358 +
16176373-16176534,16176628-16176739,16176967-16177151,
16177325-16177330
Length = 154
Score = 30.3 bits (65), Expect = 0.52
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 317 ALVGRRARGPPDGEWLRHPWTSAMSGA 237
A + + + PP G WL PW SAM+G+
Sbjct: 68 AFISKLVKPPPAGTWLT-PWCSAMAGS 93
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +2
Query: 128 SGYGMSSPPRCFPNALTCPSS--NETCGEY*VI---GSGLALPLTLLK 256
SGY S+ P P++LTC + E CG++ ++ GL + L L+K
Sbjct: 970 SGYNGSTSPTWLPSSLTCLQTLHLEKCGKWQILPLERLGLLVKLVLIK 1017
>02_01_0370 +
2659704-2660012,2660318-2660488,2660981-2661058,
2661658-2661803,2662001-2662112,2662280-2662405,
2662618-2662731
Length = 351
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = -3
Query: 302 RARGPPDGEWLRHPWTSAMSGAEPSRCLSLNTLHKSR 192
R R PPD PW S + + CL L R
Sbjct: 29 RRRAPPDAAAFPKPWVIPSSSVKSAACLQLQQARAPR 65
>04_04_0489 + 25600543-25601368,25601441-25602282
Length = 555
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 97 LQQNNFNHLIIRLWNELPSTVFPERIDMSFFKRDLWRVLSDRQRLGSAPDIAE 255
LQ NNF L++R + +P + FFK+ W + R +G P + E
Sbjct: 458 LQNNNFFPLVMRWASIVPVKYMVPLLIQGFFKK--WMYANYRYLMGERPRLDE 508
>03_05_0038 + 20121924-20122080,20123182-20123843
Length = 272
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 268 RNHSPSGGPRARLPTSAIKKKNSRGGPVPNS 360
R P G RA P S + ++ +GGP P +
Sbjct: 56 RADPPPAGSRAMDPPSRVVERRRKGGPAPGA 86
>01_05_0604 - 23583244-23584989
Length = 581
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 97 LQQNNFNHLIIRLWNELPSTVFPERIDMSFFKRDLWRVLSDRQRLGSAPDIAE 255
LQ NNF L++R + +P + FFK+ W + R +G P + E
Sbjct: 484 LQNNNFFPLVMRWASIVPVKYMVPLLIQGFFKK--WMYANYRYLMGERPRLDE 534
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 166 RETPWRGAHSIAGLSDD*NYFVVRYRNV*F 77
R+TPW A ++A D + F++ YR + F
Sbjct: 49 RDTPWPPAEAVAAHCDGDHVFLLLYRELWF 78
>03_05_0545 + 25419031-25420758
Length = 575
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 320 IALVGRRARGPPDGEWLRHPWTSA 249
+A A PP G W R PW +A
Sbjct: 387 LAAATTEAASPPRGRWRRVPWLAA 410
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 142 ELPSTVFPERIDMSFFKRDLWRVLSDRQRL 231
+LPS FPE + + F KR R + R RL
Sbjct: 319 DLPSFCFPEGVKLCFIKRRSERKIQLRARL 348
>08_02_0101 + 12374476-12376683
Length = 735
Score = 26.2 bits (55), Expect = 8.4
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = -3
Query: 344 PPLEFFFFIALVGRRARGPPDGEWLRHPWTSAMSGAEPSRCLS--LNTLHKSRLKKDM 177
PP +A + A P D L H S + P RCL+ L L + R+ DM
Sbjct: 3 PPTPLARLLAAISAAASSPADLRRLSHRVLSPSAPLPPLRCLNTLLMALARHRMFPDM 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,764,127
Number of Sequences: 37544
Number of extensions: 260753
Number of successful extensions: 616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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