Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0188
(376 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118614-1|AAM49983.1| 326|Drosophila melanogaster LP10853p pro... 29 1.9
AE014296-3288|AAF49060.1| 326|Drosophila melanogaster CG7306-PA... 29 1.9
AE014297-3098|AAF55956.1| 444|Drosophila melanogaster CG13407-P... 29 2.6
U02042-1|AAA19249.1| 606|Drosophila melanogaster GABA receptor ... 27 5.9
M69057-3|AAA28558.1| 595|Drosophila melanogaster GABA-alpha rec... 27 5.9
M69057-2|AAA28557.1| 601|Drosophila melanogaster GABA-alpha rec... 27 5.9
M69057-1|AAA28556.1| 606|Drosophila melanogaster GABA-alpha rec... 27 5.9
AE014297-2568|AAF55584.1| 950|Drosophila melanogaster CG7709-PA... 27 5.9
AE014296-1598|AAN11989.1| 585|Drosophila melanogaster CG10537-P... 27 5.9
AE014296-1597|AAF50311.1| 606|Drosophila melanogaster CG10537-P... 27 5.9
AE014296-1596|AAN11988.1| 606|Drosophila melanogaster CG10537-P... 27 5.9
>AY118614-1|AAM49983.1| 326|Drosophila melanogaster LP10853p
protein.
Length = 326
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 146 SPPRCFPNALTCPSSNET 199
SPPR NALTCPS+ ++
Sbjct: 261 SPPRAEANALTCPSTKQS 278
>AE014296-3288|AAF49060.1| 326|Drosophila melanogaster CG7306-PA
protein.
Length = 326
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 146 SPPRCFPNALTCPSSNET 199
SPPR NALTCPS+ ++
Sbjct: 261 SPPRAEANALTCPSTKQS 278
>AE014297-3098|AAF55956.1| 444|Drosophila melanogaster CG13407-PA
protein.
Length = 444
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 232 GSAPDIAEVHG*RNHSPSGGPRARLPTSAIKKKNSRGGPVPNS 360
GS P H H P+G P A PT + KK G V N+
Sbjct: 120 GSGPAYPSAH----HPPAGPPPAPPPTKSSKKSKKSSGSVMNA 158
>U02042-1|AAA19249.1| 606|Drosophila melanogaster GABA receptor
protein.
Length = 606
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 242 GAEPSRCLSLNTLHKSRLKKDMSMRSGNTVEGSSFHSRII 123
G +P + + LH ++KKD++ G T +SRI+
Sbjct: 534 GGDPEAAVPAHLLHPGKVKKDINKLLGITPSDIDKYSRIV 573
>M69057-3|AAA28558.1| 595|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 595
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 242 GAEPSRCLSLNTLHKSRLKKDMSMRSGNTVEGSSFHSRII 123
G +P + + LH ++KKD++ G T +SRI+
Sbjct: 523 GGDPEAAVPAHLLHPGKVKKDINKLLGITPSDIDKYSRIV 562
>M69057-2|AAA28557.1| 601|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 601
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 242 GAEPSRCLSLNTLHKSRLKKDMSMRSGNTVEGSSFHSRII 123
G +P + + LH ++KKD++ G T +SRI+
Sbjct: 529 GGDPEAAVPAHLLHPGKVKKDINKLLGITPSDIDKYSRIV 568
>M69057-1|AAA28556.1| 606|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 606
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 242 GAEPSRCLSLNTLHKSRLKKDMSMRSGNTVEGSSFHSRII 123
G +P + + LH ++KKD++ G T +SRI+
Sbjct: 534 GGDPEAAVPAHLLHPGKVKKDINKLLGITPSDIDKYSRIV 573
>AE014297-2568|AAF55584.1| 950|Drosophila melanogaster CG7709-PA
protein.
Length = 950
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +1
Query: 277 SPSGGPRARLPTSAIKKKNS---RGGPVPNSPYS 369
S SGGP A P+S+ +S GGP P +P S
Sbjct: 631 SSSGGPYASAPSSSYSAPSSGSNSGGPYPAAPSS 664
>AE014296-1598|AAN11989.1| 585|Drosophila melanogaster CG10537-PB,
isoform B protein.
Length = 585
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 242 GAEPSRCLSLNTLHKSRLKKDMSMRSGNTVEGSSFHSRII 123
G +P + + LH ++KKD++ G T +SRI+
Sbjct: 513 GGDPEAAVPAHLLHPGKVKKDINKLLGITPSDIDKYSRIV 552
>AE014296-1597|AAF50311.1| 606|Drosophila melanogaster CG10537-PA,
isoform A protein.
Length = 606
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 242 GAEPSRCLSLNTLHKSRLKKDMSMRSGNTVEGSSFHSRII 123
G +P + + LH ++KKD++ G T +SRI+
Sbjct: 534 GGDPEAAVPAHLLHPGKVKKDINKLLGITPSDIDKYSRIV 573
>AE014296-1596|AAN11988.1| 606|Drosophila melanogaster CG10537-PC,
isoform C protein.
Length = 606
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 242 GAEPSRCLSLNTLHKSRLKKDMSMRSGNTVEGSSFHSRII 123
G +P + + LH ++KKD++ G T +SRI+
Sbjct: 534 GGDPEAAVPAHLLHPGKVKKDINKLLGITPSDIDKYSRIV 573
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,117,243
Number of Sequences: 53049
Number of extensions: 418517
Number of successful extensions: 936
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 982468965
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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