Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0188
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    26   7.6  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    26   7.6  
L26290-1|AAA27981.1|  441|Caenorhabditis elegans clathrin-associ...    26   7.6  
L16560-4|AAA27997.1|  111|Caenorhabditis elegans Hypothetical pr...    26   7.6  
AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : short...    26   7.6  
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    26   7.6  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    26   7.6  

>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
           protein F40F12.5 protein.
          Length = 1144

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = -3

Query: 290 PPDGEWLRHPWTSAMSGAEPSRCLSLNTLHKSRLKKDMSMRSGNTVEGSSFHSRI 126
           PP    + +P  S     +PSR  S+ T+ +++  +         VE    + RI
Sbjct: 406 PPPSSSMNYPSMSNTHSLQPSRSKSVQTIQRNQFVRQNPAERNERVESDQLNFRI 460


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
            T06E4.3b protein.
          Length = 2514

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 160  FPERIDMSFFKRDLWRVLSDRQRL 231
            F E+I+ S  + ++WR+L+D  R+
Sbjct: 1097 FIEQINYSILRSNIWRILTDISRI 1120


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
            T06E4.3a protein.
          Length = 2531

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 160  FPERIDMSFFKRDLWRVLSDRQRL 231
            F E+I+ S  + ++WR+L+D  R+
Sbjct: 1097 FIEQINYSILRSNIWRILTDISRI 1120


>L26290-1|AAA27981.1|  441|Caenorhabditis elegans
           clathrin-associated protein homologueprotein.
          Length = 441

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 175 QCVRETPWRGAHSIAGLSDD*NYFVVRYR 89
           QCV+ T +   H+I+ +  D  Y ++RYR
Sbjct: 254 QCVKLTKFETEHAISFIPPDGEYELMRYR 282


>L16560-4|AAA27997.1|  111|Caenorhabditis elegans Hypothetical
           protein D2007.1 protein.
          Length = 111

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 155 RCFPNALTCPSSNETCG 205
           RCFP    CP + + CG
Sbjct: 78  RCFPRLSNCPVTRDQCG 94


>AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform b protein.
          Length = 435

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 175 QCVRETPWRGAHSIAGLSDD*NYFVVRYR 89
           QCV+ T +   H+I+ +  D  Y ++RYR
Sbjct: 248 QCVKLTKFETEHAISFIPPDGEYELMRYR 276


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 175 QCVRETPWRGAHSIAGLSDD*NYFVVRYR 89
           QCV+ T +   H+I+ +  D  Y ++RYR
Sbjct: 254 QCVKLTKFETEHAISFIPPDGEYELMRYR 282


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
            protein.
          Length = 2514

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 160  FPERIDMSFFKRDLWRVLSDRQRL 231
            F E+I+ S  + ++WR+L+D  R+
Sbjct: 1097 FIEQINYSILRSNIWRILTDISRI 1120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,585,854
Number of Sequences: 27780
Number of extensions: 203721
Number of successful extensions: 417
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)