Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0188
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   3.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   3.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   3.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 158 CFPNALTCPSSNETCGE 208
           C P  + CP  N T GE
Sbjct: 436 CLPEEILCPHFNVTDGE 452


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -1

Query: 349 PGPPSSFFFLLRL*ADEHAAHLMVSGYVTHGLQ--QCQGQSQAAA 221
           P  P SF F +   A EH    +    + HGLQ     G SQ +A
Sbjct: 302 PPTPGSFNFSMAALATEHTPLSVKFPGMGHGLQPPDLAGTSQGSA 346


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 317 ALVGRRARGPPDGEWLRHPWTS 252
           AL+  R R    G W+ HP +S
Sbjct: 65  ALMKERIRQKAAGHWVIHPCSS 86


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 317 ALVGRRARGPPDGEWLRHPWTS 252
           AL+  R R    G W+ HP +S
Sbjct: 65  ALMKERIRQKAAGHWVIHPCSS 86


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 317 ALVGRRARGPPDGEWLRHPWTS 252
           AL+  R R    G W+ HP +S
Sbjct: 65  ALMKERIRQKAAGHWVIHPCSS 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,003
Number of Sequences: 438
Number of extensions: 2636
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)