Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0188
(376 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54550.1 68414.m06221 F-box family protein contains Pfam:PF00... 30 0.44
At5g58910.1 68418.m07380 laccase, putative / diphenol oxidase, p... 27 3.1
At3g60230.1 68416.m06731 hypothetical protein 27 3.1
At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N domain-... 27 4.1
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ... 27 5.4
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 26 7.1
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 26 7.1
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 26 7.1
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ... 26 7.1
At4g38620.1 68417.m05465 myb family transcription factor (MYB4) ... 26 9.4
At4g20850.1 68417.m03025 subtilase family protein contains simil... 26 9.4
At3g56110.1 68416.m06236 prenylated rab acceptor (PRA1) family p... 26 9.4
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 26 9.4
>At1g54550.1 68414.m06221 F-box family protein contains Pfam:PF00646
F-box domain; contains TIGRFAM TIGR01640 : F-box protein
interaction domain
Length = 362
Score = 30.3 bits (65), Expect = 0.44
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 70 LH*IKHFGILQQNNFNHLIIR-LWNELPSTVFPERIDMSFFKRDLWRVL 213
LH F + NN NH I+R L+ P V ID+ F D WRVL
Sbjct: 137 LHRYDKFALGYDNNRNHKILRFLYEGSPRNVI---IDVYDFSSDSWRVL 182
>At5g58910.1 68418.m07380 laccase, putative / diphenol oxidase,
putative similar to diphenol oxidase [Nicotiana
tabacum][GI:1685087]
Length = 523
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 184 FFKRDLWRVLSDRQRLGSAPDIAEVHG*RNHSPS 285
++K D+ ++++ R+G+AP ++ H HS S
Sbjct: 126 WWKSDVEELINEASRIGTAPSASDAHTINGHSGS 159
>At3g60230.1 68416.m06731 hypothetical protein
Length = 207
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 HG*RNHSPSGG-PRARLPTSAIKKKNSRGGPVPNSPYSES 375
+G HS S G P PT+ + N GP+P +P S+S
Sbjct: 94 NGPNAHSRSQGEPGVGGPTNPTESFNRNTGPIPKAPTSQS 133
>At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N
domain-containing protein / octicosapeptide/Phox/Bemp1
(PB1) domain-containing protein contains Pfam profiles
PF00627: Ubiquitin-associated (UBA)/TS-N domain,
PF00569: Zinc finger ZZ type domain, PF00564: PB1 domain
Length = 704
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 275 WLRHPWTSAMSGAEPSRCLSLNTLHKSRLKKDMSMRSGNTVEGSSFHSRI 126
WL HP A +G P RC SR D+++ G V S+ ++I
Sbjct: 354 WLSHPVPRATNGGAPLRCTRPKL--DSRFVLDVNVIDGTVVAPSAPFTKI 401
>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 721
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 355 WVPGPPSSFFFLLRL*ADEHAAHLMVSGYVTHGLQQ 248
W+P PP++ F LR H ++ +G + H + +
Sbjct: 554 WLPAPPNTVFDFLREATHRHNWDVLCNGEMMHKIAE 589
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 268 RNHSPSGGPRAR-LPTSAIKKKNSRGG 345
+ +P PR++ L T+A KKKN +GG
Sbjct: 852 KKDNPPDSPRSKKLATAANKKKNRKGG 878
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 268 RNHSPSGGPRAR-LPTSAIKKKNSRGG 345
+ +P PR++ L T+A KKKN +GG
Sbjct: 849 KKDNPPDSPRSKKLATAANKKKNRKGG 875
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 292 PRARLPTSAIKKKNSRGGPVPNSPYSES 375
P+ PT + N GP P+ PY S
Sbjct: 488 PQIPEPTKPVSPPNEAQGPTPDDPYDAS 515
>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 530
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 269 RHPWTSAMSGAEPSRCLSLNTLHKSRLKKDMSMRSGNTVEGSSFHSR 129
RHP + + + PSR LS H+ ++ + S N +G HS+
Sbjct: 142 RHPHRISFTSSLPSRTLSCGVCHQ-QVDNNYGAYSCNNCDGYFVHSK 187
>At4g38620.1 68417.m05465 myb family transcription factor (MYB4)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 282
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 56 PINNTFTELNISVSYNKIILII**SGYGMSSPPRCFPNALTCPSSNE-TCG 205
P+ F +LN+ + + + G+G S+ PRCF +L + E CG
Sbjct: 190 PVQEKFPDLNLELRISLPDDVDRLQGHGKSTTPRCFKCSLGMINGMECRCG 240
>At4g20850.1 68417.m03025 subtilase family protein contains
similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
(TPP-II) (Tripeptidyl aminopeptidase)
(Swiss-Prot:P29144) [Homo sapiens]
Length = 1380
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 202 WRVLSDRQRLGSAPDIAEVHG*RNHSPSGGPRARLPTSAIKKKNSRGGP 348
+ V+ D LG EV+G +P GP R+P + I K P
Sbjct: 714 FNVVVDPTNLGDGVHYFEVYGIDCKAPERGPLFRIPVTIIIPKTVANQP 762
>At3g56110.1 68416.m06236 prenylated rab acceptor (PRA1) family
protein weak similarity to prenylated Rab acceptor 1
(PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
PF03208: Prenylated rab acceptor (PRA1)
Length = 209
Score = 25.8 bits (54), Expect = 9.4
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -3
Query: 344 PPLEFFFFIALVGRRARGPPDGEWLRHPWTSAMSGAEPSRCLSLNTLHKSRLKKDMSMRS 165
PP+ F R + DG R PWT + + +R SL T SR++K+++
Sbjct: 19 PPINTPAFRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPESL-TDALSRIRKNLAYFK 77
Query: 164 GNTV 153
N V
Sbjct: 78 VNYV 81
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -3
Query: 272 LRHPWTSAMSGAEPSRCLSLNTLHKSRLKKDMSMR 168
L HP ++ P CL ++ HK+++ K+ +++
Sbjct: 74 LPHPLIDLVAEDPPELCLIIDDKHKNKITKEAALK 108
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,061,597
Number of Sequences: 28952
Number of extensions: 189665
Number of successful extensions: 414
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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